Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00282 ATGGCGCCGGGAGCCGGAGGCTTGCAGCTCACTTCAATCGCCGGTAACAGCAGAGCCGCCACAGCTGACTCCGATGAGCTTGAGGATGTGCGGCTCTTGGACTCCTACGACAAAATCGACGCCGAAGCGAGGCGGATTCAGGTGACGGTCACCGGCATGACCTGCGCCGCTTGCTCCAATTCCGTAGAATCGGCTCTCAAATCACTTGACGGAGTTATTAGCGCCTCCGTCGCACTGCTTCAGAACAAAGCCGACGTAGTTTTCAACTCGGCTCTGCTCAAGTGGTGGTGGGGTTACTTGAACTTGTATATGAAACCAGGTTTTTTGGGGTCGTCAGGTACAGGTGATCCTTGTGATGAAGACATTAAAAATGCAATTGAAGATGCTGGGTTTGAAGCCGACATATTACCTGAATCCAGTACTGTTGGAAAGATGCCACATGGAACCTTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAATATGATCCCGGAGTAATTAGTAAAGATGATATAGTCAACGCGATTGAAGATTGTGGTTTTGATGCTTCATTTTTACAAAGCAATGAACAAGATAAAATAATCTTAGGGGTGGTTGGTGTGTACAGTGTGATTGATGGACAAGTTTTAGAAGGCATTATTAGCAGCATAAAAGGAGTCAGGCAGTTTCATTTTGACCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCAGAAGTTCTCAGTTCTAGATCCTTAGTTGATGCAATCCATGGCGGAAGCAATGGGAAGTTTATATTACATGTTAGAAGCCCTTATACGAGAATGGCTTCTAAAGGCGTTGAAGAGATCTCAACTATATTTCGGCTCTTTGTCTCTAGTTTGTTACTTAGTATTCCTCTCTTCTTCGTGAGGGTAGTTTGTCCTCATATACCAATGGTGTATTCCCTGTTACTTCGGCGATGTGGGCCTTTCCTCATGAGTGATTGGCTGAAATGGGCATTGGTGAGTCTCATTCAATTTGTGATCGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCTACAAACATGGATGTCCTTGTTGCAGTGGGTACTACCGCATCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAATATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATAAAGAAATTAGTAGAACTTGCTCCTGCGACTGCTTTACTAGTTGTCAAAGATAAAGAAAGGGAAATTGATTGTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATCCCCGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAAAGCATGGTAACAGGTGAATCTGTGCCTATTTTAAAGGAGGTGAATGCTTCTGTTATTGGAGGCACAATAAATTTGCATGGTGTCCTTCATGTTCAAGCTGCCAAAGTAGGATCTGAAACAGTTCTGAGTCAGATTATTAGTTTGGTTGAGACAGCGCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGATTATGTAAGTATATTTGGTCATGGTTGTGTTTGCCTATGTTGCCCTCAGGGTGGCAAGTATATTTGTTCCATTGGTTGTTTCTTTGGCATTATTGACGTTATTGTGCTGGTAAGGTACATTGCTGGGTCTATTGGAGCTTACCCAGATGACTGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCGATATCTGTAGTAGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACGGCTGTGATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTGTTAATCAAAGGAGGCGATGCATTGGAAAGGGCCCAGAGGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACAGCCAAGTCATTCACAGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGCATTCGGGTGAATTTATAGAGGATTCATACAGGATATTTCCATATTTCCTTCCTTCTTGTCTGCTTAACTTCTTGAATAGCGTTACGGCACGAGCTAGCAGTGAACACCCACTAGCAAAAGCAATATTATCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCTGCTGATACTGGTACTGAGAATGATGCTGGGAATGACGTGAAAACTGACTTCTCTGCTCTTCCTGGAAGAGGTGTTCAATGTTTGATAGATGGGAAGCGCATTTTGGTTGGTAACAGGAAGTTGATGGCGGAAAATGGCATACATATTTCAACAGAGGTGGAAAATTTTGTGGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATAATGATATATTAACTGGAGTCTTGGGGATTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGTCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACTGGTGATAACTGGAGAACAGCTCGTGCTGTTGCTAAGGAGGTTAGCATACAAGATGTTAGGGCAGAGGTTATGCCAGCAGGAAAAGCAGATGTTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCTATGGTGGGTGATGGCATCAATGATTCTCCTGCATTAGCTGCAGCTGATGTTGGTATGGCTATCGGAGCTGGAACTGATATTGCAATTGAAGCTGCTGACTATGTGCTGATGAGAAATAATTTAGAAGATGTGATCACAGCCATTGATCTTTCCCGGAAGACCTTCTCTCGAATTCGACTGAATTATGTGTTCGCAATGGCTTACAATGTTGTGGCCATACCAGTTGCCGCTGGTGTTTTCTATCCTTCACTGGGGATCAAGCTACCACCTTGGGTTGCTGGTGCGTGTATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTGCAATACTTGAAATAATTGTAGAATAG 3168 0.434 MAPGAGGLQLTSIAGNSRAATADSDELEDVRLLDSYDKIDAEARRIQVTVTGMTCAACSNSVESALKSLDGVISASVALLQNKADVVFNSALLKWWWGYLNLYMKPGFLGSSGTGDPCDEDIKNAIEDAGFEADILPESSTVGKMPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSSGEVEYDPGVISKDDIVNAIEDCGFDASFLQSNEQDKIILGVVGVYSVIDGQVLEGIISSIKGVRQFHFDQISGELDVLFDPEVLSSRSLVDAIHGGSNGKFILHVRSPYTRMASKGVEEISTIFRLFVSSLLLSIPLFFVRVVCPHIPMVYSLLLRRCGPFLMSDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKEREIDCLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINLHGVLHVQAAKVGSETVLSQIISLVETAQMSKAPIQKFADYVSIFGHGCVCLCCPQGGKYICSIGCFFGIIDVIVLVRYIAGSIGAYPDDWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQRVKYVIFDKTGTLTQGKATVTTAKSFTGMERGEFLKLVASAEHSGEFIEDSYRIFPYFLPSCLLNFLNSVTARASSEHPLAKAILSYARHFHFFDDSSADTGTENDAGNDVKTDFSALPGRGVQCLIDGKRILVGNRKLMAENGIHISTEVENFVVELEESAKTGILVAYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVSIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVFYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPRLTAILEIIVE 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00282 1055 ProSiteProfiles Heavy-metal-associated domain profile. 44 134 IPR006121 GO:0046872
Vimu10g00282 1055 Gene3D - 695 722 IPR023299 GO:0000166
Vimu10g00282 1055 FunFam Copper-exporting P-type ATPase A 149 218 - -
Vimu10g00282 1055 SUPERFAMILY HMA, heavy metal-associated domain 148 222 IPR036163 GO:0046872
Vimu10g00282 1055 PRINTS P-type cation-transporting ATPase superfamily signature 876 886 - -
Vimu10g00282 1055 PRINTS P-type cation-transporting ATPase superfamily signature 929 948 - -
Vimu10g00282 1055 PRINTS P-type cation-transporting ATPase superfamily signature 684 698 - -
Vimu10g00282 1055 PRINTS P-type cation-transporting ATPase superfamily signature 854 865 - -
Vimu10g00282 1055 PRINTS P-type cation-transporting ATPase superfamily signature 503 517 - -
Vimu10g00282 1055 PRINTS P-type cation-transporting ATPase superfamily signature 952 964 - -
Vimu10g00282 1055 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 26 1047 - -
Vimu10g00282 1055 CDD HMA 47 133 IPR006121 GO:0046872
Vimu10g00282 1055 CDD P-type_ATPase_Cu-like 314 1025 - -
Vimu10g00282 1055 ProSitePatterns E1-E2 ATPases phosphorylation site. 686 692 IPR018303 -
Vimu10g00282 1055 SUPERFAMILY HAD-like 683 1035 IPR036412 -
Vimu10g00282 1055 SFLD C1.7: P-type atpase like 666 981 - -
Vimu10g00282 1055 ProSitePatterns Heavy-metal-associated domain. 156 185 IPR017969 GO:0046872
Vimu10g00282 1055 NCBIfam HAD-IC family P-type ATPase 426 580 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00282 1055 NCBIfam HAD-IC family P-type ATPase 802 1011 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00282 1055 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Vimu10g00282 1055 FunFam ATPase copper transporting beta 41 95 - -
Vimu10g00282 1055 Pfam haloacid dehalogenase-like hydrolase 680 943 - -
Vimu10g00282 1055 FunFam Copper-exporting P-type ATPase 809 860 - -
Vimu10g00282 1055 Pfam Heavy-metal-associated domain 154 214 IPR006121 GO:0046872
Vimu10g00282 1055 Pfam Heavy-metal-associated domain 48 131 IPR006121 GO:0046872
Vimu10g00282 1055 FunFam Probable copper-transporting ATPase HMA5 817 986 - -
Vimu10g00282 1055 SUPERFAMILY Calcium ATPase, transduction domain A 456 553 IPR008250 -
Vimu10g00282 1055 ProSiteProfiles Heavy-metal-associated domain profile. 150 216 IPR006121 GO:0046872
Vimu10g00282 1055 Gene3D - 743 836 IPR023299 GO:0000166
Vimu10g00282 1055 NCBIfam copper ion binding protein 153 215 IPR006122 GO:0005507
Vimu10g00282 1055 SUPERFAMILY Calcium ATPase, transmembrane domain M 421 1003 IPR023298 -
Vimu10g00282 1055 Gene3D - 152 217 - -
Vimu10g00282 1055 CDD HMA 153 216 IPR006121 GO:0046872
Vimu10g00282 1055 Pfam E1-E2 ATPase 454 573 - -
Vimu10g00282 1055 Pfam E1-E2 ATPase 621 663 - -
Vimu10g00282 1055 Gene3D - 43 138 - -
Vimu10g00282 1055 SUPERFAMILY HMA, heavy metal-associated domain 42 92 IPR036163 GO:0046872
Vimu10g00282 1055 Gene3D - 675 694 IPR023214 -
Vimu10g00282 1055 Gene3D - 844 997 IPR023214 -
Vimu10g00282 1055 Gene3D - 441 557 - -
Vimu10g00282 1055 SFLD p-type atpase 666 981 IPR044492 -
Vimu10g00282 1055 FunFam Copper-transporting ATPase 1, putative 441 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00282 Vimu-Chr10 1763680 1770626 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00282 10 1763680 1770626 Vimu10g00282 10 1763680 1770626 ECH