Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00270 ATGCAACATCGCTCGTGCATGTCACGGGCTCGTTGCTTAGCTTCTTGTGCTTTTGCTTTCTCCATCCATAAACAACCACCACCACCACCCACCACCCACCACCATGTTTTCCACCACCACCACTTTTCTTCACTCTTGCTTCCTTCTCTCCTGCCTCCTGTCAGCTCTTTCCTGTGTTTCCATGTTCTCTGGTGCAAAGACATGAGTCACCCTTTTAAGGATTCAGATTCCGTTTCCATGATGTTAGCACAAGATCTCTTTTTTTCTTTCTTTCTCTCAGATTTCGATGCAACAGAGTCCAGAAAAGGCACACTCAGCGTGGGTGTTGGTAGGAGGGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCGAGGCTTTATGAGCTTGGGAAGGTGAGCGATGGTAAAAATTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATTAGTCTTATTCGTAGATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACACGGTCGAGTCGATGGTGCAAATGCAAATGCTGAAGCTTTATTGATTGGTTCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCCCTAGGAATAGTCTCTGCAATATCTGCCTTGAAGGCCATGCATGTCAATGGAAAGCTGGAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTCAGATTTCAAACTACTTTCCTGGGAAGTGGTGCTATAGCTGGTATTTTGCCTGCTACAACATTGGAGATATCTGATAAGAGGGATGTAATGATAAAAGATTTTCTTAAGGAGAACTCAATAGACATGACAGAGGAAAGTCTTTTGAAGCTCAAGTATGATCCAAAATCTGTTTGGGGTTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTTAGAGGATCACAAGGTCATGCTGGAACAGTCCCTATGTCCATGCGCCAGGATCCTATGGCAGCTGCTGCGGAACAAATTGTGGTCTTGGAAAGCCTCTGTAAACATCCTGAAGAATACCTTTCTTATGATGCTCATTGCAGTGATTCAACAGTGAAATCGCTGTCAAGCTCACTTGTCTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTTACGTATACAGTGGACATACGAGCAATTGATGACCTCGGACGTGAGGCTGTTATCTATGATTTGTCAAAACAAATTTACCAAATATGTGACAAGCGTTCAGTTTCCTGCATTATTGAACACAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCTCAGCTCAAGTCTGCAACTTATTCTGCACTAAAGAAGATGGAGGGTGACATTCAGGATGAAGTGCCAACATTAATGAGTGGAGCAGGCCATGATGCAATGGCAATATCTCACTTAACAAAGGTGGGAATGCTGTTTGTGCGATGTCGTGGAGGCATCAGTCACTCTCCACAAGAACATGTGCTAGATAACGATGTCTGGGCAGCTGGTTTAGCAACCTTGTCATTTCTGGAAAATCTATCATAA 1677 0.4431 MQHRSCMSRARCLASCAFAFSIHKQPPPPPTTHHHVFHHHHFSSLLLPSLLPPVSSFLCFHVLWCKDMSHPFKDSDSVSMMLAQDLFFSFFLSDFDATESRKGTLSVGVGRRGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDGKNYLERTFLSPASMRAISLIRRWMEDAGLRTWVDQMGNVHGRVDGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHVNGKLEKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPATTLEISDKRDVMIKDFLKENSIDMTEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCKHPEEYLSYDAHCSDSTVKSLSSSLVCTVGEISTWPSASNVTYTVDIRAIDDLGREAVIYDLSKQIYQICDKRSVSCIIEHKHDAGAVICDSDLSSQLKSATYSALKKMEGDIQDEVPTLMSGAGHDAMAISHLTKVGMLFVRCRGGISHSPQEHVLDNDVWAAGLATLSFLENLS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00270 558 Gene3D - 341 468 - -
Vimu10g00270 558 SUPERFAMILY Zn-dependent exopeptidases 126 557 - -
Vimu10g00270 558 NCBIfam hydantoinase/carbamoylase family amidase 135 550 IPR010158 GO:0016813
Vimu10g00270 558 FunFam Allantoate deiminase 341 468 - -
Vimu10g00270 558 CDD M20_bAS 135 555 - -
Vimu10g00270 558 Gene3D Zn peptidases 147 547 - -
Vimu10g00270 558 PANTHER ALLANTOATE DEIMINASE-RELATED 113 556 IPR010158 GO:0016813
Vimu10g00270 558 Pfam Peptidase family M20/M25/M40 201 546 IPR002933 GO:0016787
Vimu10g00270 558 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 200 209 IPR001261 -
Vimu10g00270 558 SUPERFAMILY Bacterial exopeptidase dimerisation domain 341 468 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00270 Vimu-Chr10 1657895 1662053 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00270 10 1657895 1662053 Vimu10g00270 10 1657895 1662053 ECH