Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00257 ATGGCTCCATCACCAACGTTAACCCTCTCACAACTGTCTGTGTCTCTTGTTTTGCTTTTCTTCATGTCACTTTCTTCTTCCTATGCCACTTCTCGTCTCACTCATCACCCTGCAAACTCACATCAATCACCAGCACAAACGCTCATAAGAAGCTTCAACCTCTCCCCAAAGGACCCAGTAAACATTCTCCAAGATGACAGTCAAGCTTTTCTTTCAGGGAAGATCGTCGAGAAAAAGTTCTCTTTTTTCGGTGATTCTGGACCTTCTATTCAAGACCTTGGTCACCATGCAGGTTACTATTCACTTCCCAGTTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAGTCAAGGAACAGCAAGAACGACCCAGTTGTGATATGGTTAACTGGAGGACCAGGGTGTGGCAGTGAATTGGCTTTGTTTTATGAGAATGGCCCTTTTCAAATTGCCAATAATTTGTCTCTTTTATGGAATGATTATGGTTGGGATCAGGCATCAAATATTTTATTTGTTGACCAACCTACTGGTACAGGGTTTAGTTACACTTCTGATGACAGTGACATTCGTCATGATGAAACTGGCGTTAGCAATGATTTATATAACTTCTTGCAGGAGTTTTTCAAGGCACATCCTGAGTTCGTTAAGAATGACTTCTATATCACTGGTGAATCATATGCTGGACACTATATTCCTGCTCTTGCATCCAGGGTTAACCAAGGAAACAAAGGAAATCAAGGAATTCATATAAACCTCAAGGGTTTTGCAATTGGTAATGGGTTAACAAATCCTACAATTCAGTACCCAGCATACCCAGACTTTGCATTAGATAATGGAATTATCACAAAGGCTGAACATGATGATATAAGCAAGTCAATTCCTGTTTGTGAACAAGCTGCTAAAACTTGCCAAACTCAAGGTGGAACAAGTTGTGATAATGCATTGAATATATGTTATAAAATTTTCTCAAATATATTGTCCATTGCCGGGGACATTAACTACTATGACATCAGAAAGAAGTGTGAGGGGGCACTGTGCTATGATTTCAGCAACTTGGAGACGCTGCTAAACCTGCAGAAAGTGAAGAGTGCTTTAAGTGTGCCGGGTAACTTGAAGTTTGTTTCATGCAGTTCAACAGTGTACGATGCTATGATTCAAGATTGGATGAAAAATCTGGAAGTGGGGATTCCTGCTCTTCTTGAGGATGGAATCAAGGTGCTTGTGTATGCAGGGGAAAAAGATCTCATATGCAACTGGTTAGGAAACTCAAGGTGGGTTCATGCAATGCAGTGGTCAGGCCAAAAGGCGTTTGGAACATCTCCTACAGTGAAATTTGTTGTTGATGGTGTAGATGCAGGGTCTTTGAACAGCTATGGACCTCTATCTTTTCTCAAGGTATATGAGGCTGGGCATATGGTTCCTATGGATCAACCAAAAGCTGCACTTGAGATGCTTAAAAGATGGATGGGAGGGAAACTGGCCACACAGAGATAA 1494 0.413 MAPSPTLTLSQLSVSLVLLFFMSLSSSYATSRLTHHPANSHQSPAQTLIRSFNLSPKDPVNILQDDSQAFLSGKIVEKKFSFFGDSGPSIQDLGHHAGYYSLPSSKAARMFYFFFESRNSKNDPVVIWLTGGPGCGSELALFYENGPFQIANNLSLLWNDYGWDQASNILFVDQPTGTGFSYTSDDSDIRHDETGVSNDLYNFLQEFFKAHPEFVKNDFYITGESYAGHYIPALASRVNQGNKGNQGIHINLKGFAIGNGLTNPTIQYPAYPDFALDNGIITKAEHDDISKSIPVCEQAAKTCQTQGGTSCDNALNICYKIFSNILSIAGDINYYDIRKKCEGALCYDFSNLETLLNLQKVKSALSVPGNLKFVSCSSTVYDAMIQDWMKNLEVGIPALLEDGIKVLVYAGEKDLICNWLGNSRWVHAMQWSGQKAFGTSPTVKFVVDGVDAGSLNSYGPLSFLKVYEAGHMVPMDQPKAALEMLKRWMGGKLATQR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00257 497 Pfam Serine carboxypeptidase 92 490 IPR001563 GO:0004185|GO:0006508
Vimu10g00257 497 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Vimu10g00257 497 Gene3D alpha/beta hydrolase 77 496 IPR029058 -
Vimu10g00257 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Vimu10g00257 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Vimu10g00257 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Vimu10g00257 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Vimu10g00257 497 FunFam Carboxypeptidase 83 497 - -
Vimu10g00257 497 SUPERFAMILY alpha/beta-Hydrolases 94 492 IPR029058 -
Vimu10g00257 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 89 478 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00257 Vimu-Chr10 1586138 1589393 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00257 10 1586138 1589393 Vimu10g00257 10 1586138 1589393 ECH