Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04089 ATGTCTTCTTCTTCTTCTTCTGTCACACAAACAAAAACAGAACAACAACATACGATGAAATCGAGAAAACCCAGAAACCAAATCAAAAGCCACCACAAACCCATTTCAGAAATGGATCAACAAATCCAAACCACTCGTTGCAACTCCACAATCTCATCTCTTCTTCTCTCCACACTCTCCAATGAATCCGCAGTTTCTCAGCAACCCACCAACAAAAAGATTAACTTTTTATCTGCGGCAGCTAGTTTCAGAGGTTTGGGGTGTACTGCCGGTGCTTCTCAGCAAGTGTCGGTGCCGGCGGTGATTCGTGCTTCTGCAGATTGGACTCATCAAGGGAAGAAAGCCAGAAAAAAGAAGCATACGAGGAATACTGCAGGAGGAAGTAGCAAGAACAGTGTTAATGATGGTTCTTCTGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGGAATTGATGCTGCTGCTTCTGTTGATTGTGTTGTTTCAAAGAAGAATGTTTCTTCAAGGGCTAAGATTGATTTGGAAAAGATGACTCACAAAGAACCTTCATCTTCATTCCGAAGGCGTACTACTACTGTCTACCCAGAAACCTTCTCTTTTCCGGATGCCGATCCTGACATTTTCACCACATGCTCTTTTGGAACTGCAACATACCCTCGCCATATCAGAGATCTCTCTTCTGATGATTTATCTGAGATAATGCTGCTTCAAGGAAGAATACTAATGGGAGGACGATACAATTCGCGCGACCTTTTCAGAGATTTGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATCGGTCATGTCAATACTGGACTTAAACAAGATGAAATGGAACCTCACATAAGGAAGACCAAACTTCAATTTTACGATGATGCATCAAAGCATCAGGTAGACAAAAAATGCAGCATTTGTCAGGAGGAGTTTGAAGAAGATGATGAGGTTGGGAGGCTGAAGTGTGATCATTTGTATCACTTTGAATGTATACAACAATGGGTTGCACACAAAAATTTCTGTCCTGTGTGTAAGGAGCAGGTTGCAGCTAGACATTGA 1083 0.4183 MSSSSSSVTQTKTEQQHTMKSRKPRNQIKSHHKPISEMDQQIQTTRCNSTISSLLLSTLSNESAVSQQPTNKKINFLSAAASFRGLGCTAGASQQVSVPAVIRASADWTHQGKKARKKKHTRNTAGGSSKNSVNDGSSATCVDFQDVWCGPGIDAAASVDCVVSKKNVSSRAKIDLEKMTHKEPSSSFRRRTTTVYPETFSFPDADPDIFTTCSFGTATYPRHIRDLSSDDLSEIMLLQGRILMGGRYNSRDLFRDLRLDVDNMSYEQLLELGERIGHVNTGLKQDEMEPHIRKTKLQFYDDASKHQVDKKCSICQEEFEEDDEVGRLKCDHLYHFECIQQWVAHKNFCPVCKEQVAARH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04089 360 MobiDBLite consensus disorder prediction 108 137 - -
Vifa6g04089 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 356 IPR045191 GO:0061630
Vifa6g04089 360 MobiDBLite consensus disorder prediction 1 15 - -
Vifa6g04089 360 FunFam E3 ubiquitin-protein ligase rnf12-A 279 358 - -
Vifa6g04089 360 SMART ring_2 312 352 IPR001841 -
Vifa6g04089 360 Pfam Ring finger domain 311 353 IPR001841 -
Vifa6g04089 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 358 IPR013083 -
Vifa6g04089 360 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Vifa6g04089 360 MobiDBLite consensus disorder prediction 1 40 - -
Vifa6g04089 360 SUPERFAMILY RING/U-box 311 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04089 Vifa-Chr6 1347806429 1347808573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04089 16 267 C3H Transcription Factor Family AT1G73760 39.711 2.37e-41 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07149 1 1103736570 1103744542 Vifa6g04089 6 1347806429 1347808573 ECH
Vifa6g04089 6 1347806429 1347808573 Vifa6g04089 6 1347806429 1347808573 ECH