Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03992 ATGGTGCTCTTCAATGTTTCACGCATTCAAACTACTCCCTTCGATGGACAGAAGCCTGGAACCTCTGGTCTCCGCAAAAAGGTGAAAGTATTTGTGCAACCTCATTACCTTGAAAACTTTGTTCAGGCATCATTCAATGCATTAACTGAAGAAAAAGTTAGAGGTGCAACACTAGTTGTATCTGGTGATGGTCGTTATTATTCGGAGCAAGCGATTCAGATTATAACTAAAATGGCAGCAGCGAATGGAGTAAGACGTATTTGGATTGGTCAAAATGGGTTGCTTTCAACTCCTGCAGTATCTGCTGTTATTCGTGAAAGAGTTGGGGTTGACGGATCCAAGGCAACAGGAGCATTTATACTGACAGCAAGTCACAACCCTGGAGGTCCTAATGAGGACTTTGGGATTAAATATAACATGGAAAATGGTGGACCTGCACCCGAAGGAATTACTAACAAAATATACGAGAACACCACAACAATCAAGGAGTACTTGATTGCTCCAGATCTTCCAAATGTGGATATCACCACAGTAGGTGTCACAAACTTTACAGGGCCTGAAGGACCATTTGATGTTGAGGTTTTTGATTCAGCAAGCGATTATATAAAGTTGATGAAGTCAATTTTTGACTTTGAATCTATCAGGAAACTGCTGACATCTCCTAAATTCAGTTTCTGTTATGATGCATTACATGGAGTTGCTGGAGCTTATGCAAAAAGTATTTTTGTGGATGAGCTTGGGGCACAAGAAAGCTCTTTGATAAACTGTGTACCAAAGGAAGACTTTGGAGGGGGACACCCAGACCCTAATTTGACATATGCCAAAGAGCTGGTTGCTCGTATGGGATTGGGAAAATCAGAACCAGAAGGTGAGGTCCCAGAGTTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGGTTTTTTGTCACTCCTTCGGATTCTGTGGCCATTATTGCTGCAAATGCTGTTGAAGCAATTCCATACTTTTCTGCTGGCTTAAAGGGAGTTGCCAGGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTGAAGTTTTTTGAGGTTCCCACGGGTTGGAAATTCTTTGGCAATTTAATGGATGCTGGATTGTGTTCAGTTTGCGGTGAAGAAAGTTTTGGGACTGGTTCGGACCACATTCGTGAGAAGGATGGAATCTGGGCAGTTTTGGCCTGGCTATCCATACTTGCATATAAAAACAAAGATAATCTTGAAAGCAAGCTTGTAACAGTTGAAGACATTGTTCGCCAGCATTGGGCTACTTATGGACGCCACTACTATACTCGATATGACTACGAAAATGTGGATGCAGGTGCAGCTAAGGAACTGATGGCACATTTGGTCAAACTGCAGTCCTCACTCTCAGAAGTCAATGAGATTATTAAGGGGGCAAGTTCAGATGTTTCAAAGGTTGTCCACGGTGATGAATTTGAATACAATGATCCTGTGGATGGTTCCATTTCATCACACCAGGGCATCCGATATTTGTTTGAGGACGGGTCCCGATTGATCTTCCGTCTCTCTGGAACTGGATCAGAAGGGGCAACCATTCGACTATATATCGAGCAATATGAGAAGGATCCATCAAAGATTGGGAGACTTTCACATGAAGCACTTGCTCCTCTTGTGGATGCTGCATTGAAACTTTCAAAGATGGAGGCATTCACCGGCCGATCTGCCCCCACAGTCATCACCTAA 1749 0.434 MVLFNVSRIQTTPFDGQKPGTSGLRKKVKVFVQPHYLENFVQASFNALTEEKVRGATLVVSGDGRYYSEQAIQIITKMAAANGVRRIWIGQNGLLSTPAVSAVIRERVGVDGSKATGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITNKIYENTTTIKEYLIAPDLPNVDITTVGVTNFTGPEGPFDVEVFDSASDYIKLMKSIFDFESIRKLLTSPKFSFCYDALHGVAGAYAKSIFVDELGAQESSLINCVPKEDFGGGHPDPNLTYAKELVARMGLGKSEPEGEVPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDNLESKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMAHLVKLQSSLSEVNEIIKGASSDVSKVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSHEALAPLVDAALKLSKMEAFTGRSAPTVIT 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03992 582 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 481 552 IPR005843 GO:0016868|GO:0071704
Vifa6g03992 582 CDD PGM1 9 582 - -
Vifa6g03992 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 317 439 IPR005846 GO:0005975|GO:0016868
Vifa6g03992 582 SUPERFAMILY Phosphoglucomutase, C-terminal domain 441 582 IPR036900 GO:0016868|GO:0071704
Vifa6g03992 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 4 582 IPR045244 GO:0004614|GO:0005975
Vifa6g03992 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Vifa6g03992 582 FunFam Phosphoglucomutase 5 421 582 - -
Vifa6g03992 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 199 314 IPR016055 GO:0005975|GO:0016868
Vifa6g03992 582 FunFam Phosphoglucomutase 5 5 204 - -
Vifa6g03992 582 Gene3D - 314 412 - -
Vifa6g03992 582 Gene3D - 421 582 - -
Vifa6g03992 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 293 308 IPR005841 GO:0005975|GO:0016868
Vifa6g03992 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 258 271 IPR005841 GO:0005975|GO:0016868
Vifa6g03992 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Vifa6g03992 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 222 241 IPR005841 GO:0005975|GO:0016868
Vifa6g03992 582 FunFam Phosphoglucomutase, cytoplasmic 1 314 412 - -
Vifa6g03992 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 3 229 IPR016055 GO:0005975|GO:0016868
Vifa6g03992 582 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
Vifa6g03992 582 Gene3D - 5 204 - -
Vifa6g03992 582 FunFam Phosphoglucomutase 5 205 313 - -
Vifa6g03992 582 Gene3D - 205 313 - -
Vifa6g03992 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 301 446 IPR016055 GO:0005975|GO:0016868
Vifa6g03992 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 200 309 IPR005845 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03992 Vifa-Chr6 1316129016 1316136674 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03992 6 1316129016 1316136674 Vifa6g03992 6 1316129016 1316136674 ECH