Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03504 ATGAAGTTGAGTACTGAATTTTTGTTTATGGGTTTGGTTTCTATGCTCTCTTTTGTGTCTTCTGCCATGGTGGCCTCAAATGAAGTTTTGGCGCTTAAGACCTTCAAAGAAGCTGTGTATGAGGATCCACATAAGGTTTTGTCCAATTGGAATACTTTGGATTCAGATCCTTGTGATTGGAATGGAGTTTCATGCACCGGAACTCGAGATCATGTCATCAAGCTAAACATATCAGGGGCATTACTAAGAGGGTTTCTTGCTCCAGAAATCGGGAAAATAACCTACTTGCAAGAATTGATCCTGCATGGTAACAATCTCATGGGAATAATACCGAAAGAATTGAACGCGTTGAAATCTCTTAAGGTGTTGGACTTGGGAAAGAATCAGTTATCAGGACCAATTCCTCGAGAGATTGGAAATTTGACCGAAATCGTGAAAATAAATCTGCAGTCCAATGGTTTGACTGGTAGGTTACCTCCAGAGCTTGCAAATTTGAAATACCTTCAAGAACTTCGGCTCGATAGGAATAAGCTTGAAGGGCCTGTTCCTGCTGCTAGCACTTCAAATTTTTCTTCGAATATGCATGAAATGTATGCATCTAATGCGAATTCGACTGGCTTCTGTCGTTCGTCGCTTAAAGTTGCTGATTTTTCATATAACTTTTTGGTTGGTAGCATACCGAAATGTTTGGAGTATCTTCCAAGGACTAGTTTTCAAGGGAATTGCCTTCATGTCAAAGACGTAAAACAGCGGACGAAAATTCAATGTGCTGGAGCTTCACCTGCTCAAGGCCATCCAGTAGTGAAACCAAAGCACCAACCAAAAGCCGAACATGTATCAAAACATCAAGGAGCTTCGAAACCTGCTTGGCTTTTGGCTATAGAAATAGCGACCGGGACCATGGTTGGTTCTCTCTTTCTGATTGGAATTTTCACTGCTGCCCAAAGGTGTAACAAAAAAGCATCCATCATTATTCCTTGGAAGAAATCTGCAAGCGAGAAAGAGCAAATCGCAGTATATATAGACTCGGAGATGTTGAAAGACGTCAGGAGGTATAACAGACAAGAGCTTGAGGTGGCTTGTGAAGATTTCAGCAACATAATCGGATCCTCGCCGGATAGTGTGGTTTACAAAGGTACAATGAAAGGTGGACCTGAGATCGCCGCGATTTCCCTATGCATCAAAGAAGAGAATTGGACCGGACACCTTGAACTTTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCACGAGAACACAGGAAAACTACTAGGATATTGTAGAGAAAACGCCCCGTTTACAAGAATGCTGGTTTTTGATTACGCATCGAATGGAACGCTTTATGAACACCTACATTGTTATGAAGAAGGGTTTCAGTTATCTTGGACACGACGTATGAAAATTATCATAGGCATTGCTCGTGGACTAAAGTATTTGCACACTGAAATTGATCCTCCATTCACTATCTCAGAGTTGAATTCAAACGCTGTATACCTTACAGAAGATTTTTCCCCTAAGCTGGTTGATTTTGAAAGCTGGAAGACGATTCTCGAAAGATCAGAGAAAAATTCTGGTTCTGTTAGCAGCCAAGGTGGTGTTTGTATTCCTCCAAACTCCCTTCGAGCGCGCTACCTTGATACCAAAGGAAACATTTACGCATTTGCAGTACTTGTACTTGAGATTATCAGTGGGAGATCTCCATATTGCCAAGACCGAGGATACTTGGTAGATTGGGCGAGAGATTATCTTGAAATGCCGGAAGTAATGTCATATTTGGTCGATTCTGAGTTGAAGCATTTCGGGTTCGATGATCTCAAAGTAATATGCGAGGTGATAACTCTTTGTATTAGTCCTGACCCTAATGTATGTCCATCAATGCAAGAATTATGCAGCATGCTGGAAAGCCGAATCGACACATCTATAAGCATAGAGCTCAAATCTTTAGCTTGGGCTGAGCTAGCACTTTCAACATAA 1980 0.4152 MKLSTEFLFMGLVSMLSFVSSAMVASNEVLALKTFKEAVYEDPHKVLSNWNTLDSDPCDWNGVSCTGTRDHVIKLNISGALLRGFLAPEIGKITYLQELILHGNNLMGIIPKELNALKSLKVLDLGKNQLSGPIPREIGNLTEIVKINLQSNGLTGRLPPELANLKYLQELRLDRNKLEGPVPAASTSNFSSNMHEMYASNANSTGFCRSSLKVADFSYNFLVGSIPKCLEYLPRTSFQGNCLHVKDVKQRTKIQCAGASPAQGHPVVKPKHQPKAEHVSKHQGASKPAWLLAIEIATGTMVGSLFLIGIFTAAQRCNKKASIIIPWKKSASEKEQIAVYIDSEMLKDVRRYNRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAAISLCIKEENWTGHLELYFQREVADLARLNHENTGKLLGYCRENAPFTRMLVFDYASNGTLYEHLHCYEEGFQLSWTRRMKIIIGIARGLKYLHTEIDPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSVSSQGGVCIPPNSLRARYLDTKGNIYAFAVLVLEIISGRSPYCQDRGYLVDWARDYLEMPEVMSYLVDSELKHFGFDDLKVICEVITLCISPDPNVCPSMQELCSMLESRIDTSISIELKSLAWAELALST 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03504 659 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vifa6g03504 659 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Vifa6g03504 659 Pfam Protein tyrosine and serine/threonine kinase 365 634 IPR001245 GO:0004672|GO:0006468
Vifa6g03504 659 SUPERFAMILY Protein kinase-like (PK-like) 343 636 IPR011009 -
Vifa6g03504 659 Gene3D Transferase(Phosphotransferase) domain 1 444 648 - -
Vifa6g03504 659 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vifa6g03504 659 SUPERFAMILY L domain-like 27 234 - -
Vifa6g03504 659 PANTHER PROTEIN MALE DISCOVERER 2 7 656 - -
Vifa6g03504 659 Gene3D Ribonuclease Inhibitor 24 255 IPR032675 -
Vifa6g03504 659 FunFam Inactive receptor-like serine/threonine-protein kinase 336 443 - -
Vifa6g03504 659 ProSiteProfiles Protein kinase domain profile. 362 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03504 659 Gene3D Phosphorylase Kinase; domain 1 335 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03504 Vifa-Chr6 1153914827 1153918276 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa6g03504 PK_Tyr_Ser-Thr 3.6e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07902 1 1232616146 1232619649 Vifa6g03504 6 1153914827 1153918276 PCT