Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01954 ATGGTTCCTGTATGGCTACTCACCGTCACAGTAGCAGCCACTTTACTGTTAACAACACCAACAGAATCCCAACCAGAAGCAAATTTCAAATGCGCCACCGAAAGCGCCACGTGTCGGAGCCTAACCGACTACACTTCCACCAACACAACAACCTTGAACGAAATCGCAGCCCTGTTCGGCGTCAAACACTTCCTCGACCTCCTCGGAGCCAACAACCTCCCAACCAACACCACAAACACTTACAAAGTAATCCCCAACCAAGTCATCAAGGTTCCGTTTCCGTGCAAATGCTTTAACGGAACCGGTAAATCCAACAATTTACCGCGGTACAAAATACAACCAGGTGACACGTTAAGCCATATAGCGGCGATTCGTTTTGCCGGTTTGATGAAGTATCAACAGATCCAAACCGCTAATATTAAAAAGATACCGGATGCTAACAATATAACTGCTGGTGATACGATTTTGATTCCTTTGCCTTGTAGCTGTGATAAGGTGGGTGGGAGCAGTGTGATGCACTATGCACATCTTGCGGAAAATGGTACTAGCATTGATAACATTGCTCAAAAATATGGTACAACATCACAAACTCTACTCTCAATCAACGGTATTGAGGATCCTAATAAACTTGAAGCCGGTCAAGTTCTAGATGTTCCTCTTCCAGTTTGTAACTCTAATGTGAGGAATACTTCGGTGGACTTTCCGTTGCTTGTACCAAATGGGACTTATTTCTATACTGCCAATGATTGTCTTAAATGTAAATGTGACTCTGCTGGTAGTAGTAACAACAGCAATTCTATGTTACAATGTGAGGAGTCCGGACTAAAACCGATAAATCATTGGTCGGTTTGTCCGTCTGCAAAATGCTCCGCCAGTGTGTTGATTGGGAACACTACATCTACTGATTCGTGTAGTCGGACGTTTTGTGATTATGTTGGTTATACTTCTCGCAATATCTCTGTAGTTCTTGTAACTCAAAACACTTGTGCAGTGGCACCAAGTGGTCCAGGTGGTTCGGATTCAGGGGCATCTAGGAGCATCTTGAATGGCTGGGTTTGGATCAAGCTTCTCATTCTCATTCACTTCCTTCTGTTTTTTGTTTATCATTTGTAG 1113 0.4358 MVPVWLLTVTVAATLLLTTPTESQPEANFKCATESATCRSLTDYTSTNTTTLNEIAALFGVKHFLDLLGANNLPTNTTNTYKVIPNQVIKVPFPCKCFNGTGKSNNLPRYKIQPGDTLSHIAAIRFAGLMKYQQIQTANIKKIPDANNITAGDTILIPLPCSCDKVGGSSVMHYAHLAENGTSIDNIAQKYGTTSQTLLSINGIEDPNKLEAGQVLDVPLPVCNSNVRNTSVDFPLLVPNGTYFYTANDCLKCKCDSAGSSNNSNSMLQCEESGLKPINHWSVCPSAKCSASVLIGNTTSTDSCSRTFCDYVGYTSRNISVVLVTQNTCAVAPSGPGGSDSGASRSILNGWVWIKLLILIHFLLFFVYHL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01954 370 Gene3D LysM domain 176 231 IPR036779 -
Vifa6g01954 370 Gene3D LysM domain 108 166 IPR036779 -
Vifa6g01954 370 Pfam LysM domain 184 219 IPR018392 -
Vifa6g01954 370 Pfam LysM domain 110 158 IPR018392 -
Vifa6g01954 370 SMART LysM_2 43 92 IPR018392 -
Vifa6g01954 370 SMART LysM_2 175 219 IPR018392 -
Vifa6g01954 370 SMART LysM_2 109 158 IPR018392 -
Vifa6g01954 370 SUPERFAMILY LysM domain 174 220 IPR036779 -
Vifa6g01954 370 CDD LysM 176 218 IPR018392 -
Vifa6g01954 370 ProSiteProfiles LysM domain profile. 174 218 IPR018392 -
Vifa6g01954 370 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 330 - -
Vifa6g01954 370 CDD LysM 110 157 IPR018392 -
Vifa6g01954 370 ProSiteProfiles LysM domain profile. 108 157 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01954 6 319 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 43.533 2.78e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01954 - - cam:101506878 462.996