Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01921 ATGGCTCTTCCAAAACCAGCTTTTAAGTCTGGCCTATTTCTTCCGTCTAACTTTACCTCTCGTTATGCTACAAACTCTCTTCCTAGGTTCAGCATACCAAAGAACTCAATGCCAAAAGAAGCCGCGTACCAGAAGATACGCGATGAGTTGCAGCTGGATGCTAATCCAAAGTTGAACTTAGCTTCCTTTGTGACCACAACCATGGAGGAAGAATGCAACAAACTTATCATGGAATCCATCAACAAGAATTACGTTGACATGGATGAGTATCCAGCTACCACCGATCTTCATAATCGATGTGTGAACATGATAGCGCGTTTGTTCAGTGTTGAGATTGGAGAAAACGAGAGTGCAATTGGTGCAGGAACAGTTGGATCATCTGAGGCCATAATGCTGGCAGGACTTGCATTCAAGAAAAAGTGGCAGAACAAACGTAAGGCTGAAGGAAAATCTTACGATAAGCCCAACTTGGTCGCTGGGGCTAATGTGCAAGTGTGTTGGAAGAAATTTGCTAGATATTTTGAGGTGGAACTGAGGGAAGTGAAATTGAGAGAAGATTACTATGTAATGGATCCTGCCAAAGCTGTTGAGATGGTAGATGAGAATACAGTATGTGTGGCTGCAATCTTAGGTTCAACTTATAATGGAGAATTTGAAGATGTGAAACTCTTGAATGATCTCTTGTTAGAGAAAAACAAACAAACTCAATGGGATACACCAATTCATGTGGATGCTGCAAGTGGTGGTTTTATTGCTCCTTTCTTATATCCAGAGCTAGAATGGGATTTCAAACTTCCATTAGTGAAGAGCATAAATGTTAGTGGCCATAAGTATGGCCTTGTTTATGCAGGAATTGGTTGGGTTATATGGAGGTCAAAAGAAGACTTGCCTGAAGATCTTATTTTCCATATTAACTACCTTGGAGCTGACCAACCCACATTCACCCTAAATTTTTCAAAAGGTTCAAGTCAGATAATTGCTCAATATTATCAACTAGTTCGTCTTGGTCAAGAGGGTTACCGGAGTATAATGGAGGATTGCAGAGAAAATGCAATGGTTTTGAAGCAACACTTGGAAGAGACTGGATACTTTAACATACTCTCAAAAGACAATGGAGTTCCCATGGTAGCATTTTCTCTCAGGGACAGAAACCAGTATGATGAATTCAAGATATCGGAGATGTTGCGACGCCATGGTTGGATTGTTCCGGCCTATCCAATGCCAGCAGGTGCTCAACATATCAACGTGCTTCGTGTGGTTATCAGAGCTGACTTTTCACGCACACTTGTTGAACGTCTTGCAGTTGACATAAAGAATGTATTGCATGAGCTTCAGAAACTTCCCCTCAAGATTAAGGATCAGAAGTCATTGGATGCATTCACTGAAGTCATTGCTCAAGAATCCAACAAGTGTCAGAAAATCATAAAGAAAAGAATCTTAATTAAGTAG 1449 0.4079 MALPKPAFKSGLFLPSNFTSRYATNSLPRFSIPKNSMPKEAAYQKIRDELQLDANPKLNLASFVTTTMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFSVEIGENESAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKSYDKPNLVAGANVQVCWKKFARYFEVELREVKLREDYYVMDPAKAVEMVDENTVCVAAILGSTYNGEFEDVKLLNDLLLEKNKQTQWDTPIHVDAASGGFIAPFLYPELEWDFKLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEDLIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLVRLGQEGYRSIMEDCRENAMVLKQHLEETGYFNILSKDNGVPMVAFSLRDRNQYDEFKISEMLRRHGWIVPAYPMPAGAQHINVLRVVIRADFSRTLVERLAVDIKNVLHELQKLPLKIKDQKSLDAFTEVIAQESNKCQKIIKKRILIK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01921 482 Gene3D - 1 65 - -
Vifa6g01921 482 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vifa6g01921 482 SUPERFAMILY PLP-dependent transferases 18 446 IPR015424 -
Vifa6g01921 482 FunFam Glutamate decarboxylase 7 65 - -
Vifa6g01921 482 Gene3D - 361 448 - -
Vifa6g01921 482 FunFam Glutamate decarboxylase 66 360 - -
Vifa6g01921 482 FunFam Glutamate decarboxylase 361 448 - -
Vifa6g01921 482 PANTHER GLUTAMATE DECARBOXYLASE 15 459 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vifa6g01921 482 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vifa6g01921 482 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01921 Vifa-Chr6 715982595 715984521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01921 1 451 Calmodulin-binding Proteins AT2G02010 76.497 0.0 749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01921 6 715982595 715984521 Vifa6g01921 6 715982595 715984521 ECH