Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01899 ATGTTAGACAACAACAACACTACAAATTCATCTTCTGATACTGCTTTTGCATTATCAGAAAATGGAGGTGCTAATAGCAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCGGAAGTTGTGTCTCTTTCACCAAAGACTTTGTTAGAATCTGATAGATATGTATGTGAGATCTGCAACCAAGGTTTCCAAAGAGACCAGAATCTTCAAATGCATAGAAGAAGACACAAGGTACCGTGGAAACTACTCAAGAGAGAAACAACACAAGGATTGAAAAAGAGAGTTTTTGTTTGTCCAGAACCAAGTTGTTTGCACCATGATCCTTGTCATGCTCTAGGTGACCTTGTTGGAATCAAAAAACATTTTAGAAGAAAACATAGTAATCACAAACAATGGGTTTGTGAAAAATGCAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACATGTGGTACTAGAGGACATTCGTGTGATTGTGGTCGTGTATTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGATGCATGCAATGTGAGAGGGAAGAGTAATCAACCAGAGTTTCAAGCAACAACAATGCAACCTGCATGTTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTGTGTCAGCCCCATTACAAGGACTACCAATTATTCTTCCAAAACCATTTGACAAACCTTCCACCTCTCACCAACATAACTTAGAACTTCAACTCTTGTTACCTTCTTCTACAAATCCTCAAGCCGAAAAACAAAATGCAAACGATCGAAACTACGAAACAACGCATTTGAAACTTTCCATAGGAAGTAATAACGAATCAGAGAAACAAAGAAACTCCATTTCTGCCTCTACATTGGAAGTAACAAGATTGAAGGAGTATAGTACTGAGGAGCTAAAGTTGGCAATGGCAGAAAAGGCCTATGCAGAAGAAGCACGAAAAGAAGCGAAACGACAGATTGAGATAGCTGAAGTTGAGTTTGAGAATGCTAAAAGGATAAGAAAACAAGCACAAGATGAACTTGGAAAAGCAGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGCAACACTGTTATGGAAATAACATGTCAAGCTTGTAAACAAAACTTTCAATCTTCAACTTCTGGTGTTCCTTCAGAAGAAACATCCATTGTTATGGGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1242 0.3816 MLDNNNTTNSSSDTAFALSENGGANSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACNVRGKSNQPEFQATTMQPACSSRTASSTSPSSEANFSVSAPLQGLPIILPKPFDKPSTSHQHNLELQLLLPSSTNPQAEKQNANDRNYETTHLKLSIGSNNESEKQRNSISASTLEVTRLKEYSTEELKLAMAEKAYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQNFQSSTSGVPSEETSIVMGYMSSATTEGEAE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01899 413 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vifa6g01899 413 SMART c2h2final6 136 163 IPR013087 -
Vifa6g01899 413 SMART c2h2final6 58 80 IPR013087 -
Vifa6g01899 413 SMART c2h2final6 100 130 IPR013087 -
Vifa6g01899 413 FunFam protein indeterminate-domain 12-like 37 106 - -
Vifa6g01899 413 MobiDBLite consensus disorder prediction 195 220 - -
Vifa6g01899 413 Gene3D Classic Zinc Finger 121 199 - -
Vifa6g01899 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 368 IPR031140 -
Vifa6g01899 413 Coils Coil 312 367 - -
Vifa6g01899 413 MobiDBLite consensus disorder prediction 1 44 - -
Vifa6g01899 413 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vifa6g01899 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vifa6g01899 413 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g01899 413 MobiDBLite consensus disorder prediction 385 404 - -
Vifa6g01899 413 Gene3D Classic Zinc Finger 36 101 - -
Vifa6g01899 413 MobiDBLite consensus disorder prediction 385 413 - -
Vifa6g01899 413 SUPERFAMILY beta-beta-alpha zinc fingers 57 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01899 Vifa-Chr6 708993678 708995956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01899 1 413 C2H2 Transcription Factor Family AT2G01940 54.466 2.32e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g01899 zf-C2H2 0.0038 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01899 6 708993678 708995956 Vifa6g01899 6 708993678 708995956 ECH