Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01726 ATGTCAGAGGTTAAAGACCCTGCAATAAAGCTATTTGGAAGAACAATTCCTCTTCCACTCATCATATCTAATGACTCTTCATCTTCTTCTCCTTCTTCTTCTCCACCACAATTCATCTCTGCAATACAACAAGAGGAACCATCAAGGAAAGAACTATCCACAGCACAAGATGAAGAAGCCTTTCAACAAACCGCGGAGGATTTAAAATCACTTGCAGCATCTTCAGTCATGCTTGAGAATCCTCCGAAGACTCCCTCAGCCGAAACCGAAAATTCATTACCAAAAGCTTCTACAAATGGAGAACAAAGTGAGGCTAGTGTTTCAGAAGATAAAACCCTGAAGAAACCCGACAAAATAATTCCATGTCCGCGATGCAATAGCATGGACACCAAGTTTTGTTACTTCAACAACTACAATGTCAACCAACCCCGTCATTTTTGCAAGAAATGTCAAAGATATTGGACTGCAGGAGGAACAATGAGAAATGTTCCGGTTGGTGCAGGGCGCCGCAAGAACAAGACCTCGCCTACCGCACATTATAGACATCTGATCATTCCGGAAGGAGTTAAGGTTAATTCCCCTAATGGATTACATGGTTCTGTCTTGGCGTTCGATTCAGATTCGCCTCTTTGTAATACCATGAGTTCTGTATTGAAAATTGGAGAGAGGACACCAAATTGTGTACCAAATGGCTTTCATTATCCAACTGGACCACCAAATACTTTTGTTTCCTATAGCGGGGAAGACGATCACTCGATTGGAGTTTCTGTTACAACTTCAACTTCTTCAGAGAGGAAAGTTCACACAGACACAAATGTATCAATGGATAAAAGAGTTGAAGGCTTCCCTCCTCAATTGCAATATATTCAAAGTCCCCTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACATTTTGTCCACCAAACTATCCATTAGCATTCTATCCTCCACCGGCGTATTGGGGTTGTGTGCCACCTCCATGGAATATACCATGTCTCTCACCAAATAGTCCTTCTGTTAACCAAAGTGACTCTCCGCAGTATTTACCTACTTTGGGAAAACACTCGAGGGATGGAAACATCATTACCTCGGTGAACTCACGTCAAGAACAGCCTGATAAAGAACACAATAGTACCGAAAGCGGTGTTTTGACCCCAAAAACACTTAGATTCGATGATCCAAACGAAGCTGCCAAGAGTTCCTTATGGTCAAAGCTTGGAATCAGTAATGACAAAGCCAACTCCCTCAATGGAGGAAGCATGTTCAATGCATTTCAATCCAAGGGAAAGGACAATAATCACTCGGTTGAAGCGTCGCCGATGATGTATGCCAACCCTGCAGCTTTATCGCGGTCTCGTACCTTCCACGAAGGATCCTAA 1386 0.4293 MSEVKDPAIKLFGRTIPLPLIISNDSSSSSPSSSPPQFISAIQQEEPSRKELSTAQDEEAFQQTAEDLKSLAASSVMLENPPKTPSAETENSLPKASTNGEQSEASVSEDKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKTSPTAHYRHLIIPEGVKVNSPNGLHGSVLAFDSDSPLCNTMSSVLKIGERTPNCVPNGFHYPTGPPNTFVSYSGEDDHSIGVSVTTSTSSERKVHTDTNVSMDKRVEGFPPQLQYIQSPLLPYPWNSAMPPPTFCPPNYPLAFYPPPAYWGCVPPPWNIPCLSPNSPSVNQSDSPQYLPTLGKHSRDGNIITSVNSRQEQPDKEHNSTESGVLTPKTLRFDDPNEAAKSSLWSKLGISNDKANSLNGGSMFNAFQSKGKDNNHSVEASPMMYANPAALSRSRTFHEGS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01726 461 MobiDBLite consensus disorder prediction 78 112 - -
Vifa6g01726 461 MobiDBLite consensus disorder prediction 20 63 - -
Vifa6g01726 461 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Vifa6g01726 461 MobiDBLite consensus disorder prediction 20 49 - -
Vifa6g01726 461 MobiDBLite consensus disorder prediction 78 106 - -
Vifa6g01726 461 Pfam Dof domain, zinc finger 118 174 IPR003851 GO:0003677|GO:0006355
Vifa6g01726 461 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Vifa6g01726 461 PANTHER CYCLIC DOF FACTOR 2 1 460 IPR045174 GO:0003700|GO:0006355
Vifa6g01726 461 MobiDBLite consensus disorder prediction 339 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01726 Vifa-Chr6 648269244 648271678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01726 1 459 C2C2-Dof Transcription Factor Family AT3G47500 40.125 9.41e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa6g01726 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01726 - - gmx:100813315 521.161