Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00759 ATGGATCCTCGTTTCAACAATTTCAAATTCAACCAAACCCCCAACTCAATCGACACAGAAGATCACACTTTCGGATTCATAGACGATCTTTTTCTTCTTCCACCACCTGATCCAACCAACACTTCAATCTCCGCCATAACCACCGCAGAAGAAGATTCACCTCTGGATGACACCGAATTCTCTGCTACTGTTCTGCGTTACATAAACCAAATGCTCATGGAAGAAGACATGGAGAAGAAACCATGTATGTTTCATGATCCATTGGCTCTACAAGCTGCTGAGAAATCCTTCTATGAAGTCATTGGTGAGACATACCCTTCTTGTTCTTCTTCTGGTTCTATTCGAAATCTTCACAATGTGGAGAGTCCTGATTGTGGTACCACTACTAGTACTAGTGGTACTAGTAGTAGTTCTGTTGAGTTTGAATCGCATTGGAGGAATTTTGATGCTGCTGAGTACAAGCCTTCCATATTGCGAACCAGTTTTCCTTCTGATTTTGTTTTTCAAGCTAGTTCTATGGATGGATTTCCTGATGATAAATTGCTGAGTAAGAGTGAGTCTGTATTGCAATTTGAGAGGGGTGTGGAGGAAGCTAATAAGTTTCTTCCTAAAGTGAATCCCTTGGTTATTGACTTGGGCAAGAAGAACCCTTTTATTCATTCGTTTAGGACGGTTCCGGAGGAGGTGGTAGTTAAGACAGAGAGTAATGAAGGGGAACATTTTTCTGCTGAGGCGAGGGGGAGGAAGAATCACGAGCGGGAAGATGAAACGGATTTACAAGACGAGAGAAGTAATAAGCAGTCAGCTGTTTACATTGATGACAGTGAGCTATCGGAGTTATTTGATAAGGTGCTGCTGGGCACAGGGTGCGGGAAGGAGGGAGCTAGTAAGGAAGCGAAGGCTAATGGACTAGACACGAGTTTGCAGCAGAAAGAAGAAGCAAATAATTCTGGTGGTGGAAAGGGTCGTGGTAAGAAACAAGGTAATAAGAAAGGTGTTGTGGATCTGAGAACAATGTTGATTGTGTGTGCACAATCGGTTTCTTCTGATGATCGTGTGACTGCTAAGGAGTTGTTAAAGCAGATAAGGCAACATTCTTCTCCACTTGGTGATGGATCTCAGAGGCTGGCTCATTGCTTTGCAAATGCCCTCGAGGCTCGCTTGTCTGGCACAGGCACTCAAATTTATACTGCTTCATACTCCAAAAGAAACTCTTCCGCTGACATGGTGAAAGCTTACCAAATGTTTATTTCAGCCTGTCCATTCAAGAAGCTTGCAATCATTTTTGCAAACCATACAATTTTGAATCTAGCCAAGGAAGTTGAGACTCTTCACATTGTAGATTTTGGCATCCGTTACGGCTTCCAATGGCCTGCCCTTATTTATCGTCTATCAAAACGGCCTGGTGGGCCTCCTAAGCTGCGCTTGACAGGGATAGAGCTTCCTCAACCTGGTTTCAGGCCTGCAGAGAGAGTTCAGGAGACAGGGCTTCGTCTCGCAAGGTATTGTGAACGTTTTAGTGTTCCATTTGAGTTCAATGCTATTGCACAAAAATGGGAAACCATCAAAATTGAGGACTTGAAGATACAGAAAAATGAACTTCTCGTTGCGAATTGTATATGTCGGTTTAAACATCTACTTGATGAGACCGTTGTGCTGAATAGTCCCAGGGATACTGTTTTAAAACTAATTAGGAATTCAAAACCCAATATCTTTATACATACTACTGTCAATGGGAGCTATAATGCTCCGTTCTTCGTGACACGGTTCAAGGAGGCTCTTTTCCATTACTCTACAATGTTTGATGTGCTTGACATCAATGTTGCTAGTGAAGATCCAATGAGGTTGATGTATGAGAAAGAGTTCTATGGGCGGGAGGTAATGAATACTATAGCTTGTGAAGGTTCTGAGAGGGTCGAGAGGCCAGAGATATACAAGCAATGGCAGGTTCGGAACATAAGGGCTGGGTTTAGACAACTGCCTTTGGATAAACAACTCATCAACAAGTTAAGATGCAAGTTGAAAGATGTGTACCATAGTGATTTCATGCTTGTTGAAGATGGAAACAGCATGCTGCAAGGTTGGAAGGGCCGAATAGTTTATGCTTCCTCCTGTTGGGTGCCTGCATAG 2130 0.4296 MDPRFNNFKFNQTPNSIDTEDHTFGFIDDLFLLPPPDPTNTSISAITTAEEDSPLDDTEFSATVLRYINQMLMEEDMEKKPCMFHDPLALQAAEKSFYEVIGETYPSCSSSGSIRNLHNVESPDCGTTTSTSGTSSSSVEFESHWRNFDAAEYKPSILRTSFPSDFVFQASSMDGFPDDKLLSKSESVLQFERGVEEANKFLPKVNPLVIDLGKKNPFIHSFRTVPEEVVVKTESNEGEHFSAEARGRKNHEREDETDLQDERSNKQSAVYIDDSELSELFDKVLLGTGCGKEGASKEAKANGLDTSLQQKEEANNSGGGKGRGKKQGNKKGVVDLRTMLIVCAQSVSSDDRVTAKELLKQIRQHSSPLGDGSQRLAHCFANALEARLSGTGTQIYTASYSKRNSSADMVKAYQMFISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGFRPAERVQETGLRLARYCERFSVPFEFNAIAQKWETIKIEDLKIQKNELLVANCICRFKHLLDETVVLNSPRDTVLKLIRNSKPNIFIHTTVNGSYNAPFFVTRFKEALFHYSTMFDVLDINVASEDPMRLMYEKEFYGREVMNTIACEGSERVERPEIYKQWQVRNIRAGFRQLPLDKQLINKLRCKLKDVYHSDFMLVEDGNSMLQGWKGRIVYASSCWVPA 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00759 709 ProSiteProfiles GRAS family profile. 327 707 IPR005202 -
Vifa6g00759 709 MobiDBLite consensus disorder prediction 292 329 - -
Vifa6g00759 709 MobiDBLite consensus disorder prediction 302 316 - -
Vifa6g00759 709 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 258 700 IPR005202 -
Vifa6g00759 709 MobiDBLite consensus disorder prediction 233 268 - -
Vifa6g00759 709 Pfam GRAS domain family 336 706 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00759 Vifa-Chr6 269919491 269921620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00759 64 709 GRAS Transcription Factor Family AT1G07530 55.459 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g00759 GRAS 1.2e-109 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00759 6 269919491 269921620 Vifa6g00759 6 269919491 269921620 ECH
Vifa2g01545 2 416680996 416682168 Vifa6g00759 6 269919491 269921620 ECH
Vifa1g01083 1 177368598 177370790 Vifa6g00759 6 269919491 269921620 PCT