Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00638 ATGGATTCTTCTAGTGAACAACATCAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGGAGAACAAGACAAAAAGGTAAAACCTCAACCAGAAGCACTAAAATGTCCGAGATGTGACTCAAGCAACACCAAGTTTTGTTACTATAACAATTACAGTCTTTCGCAACCGAGATATTTCTGCAAATCATGTAGGAGATATTGGACTAAAGGAGGTACGTTAAGAAATGTTCCTGTAGGTGGGGGGTGTAGAAAGAACAAAAGATCTTCCCCGGCGTCTAGAAGAATTCAAGATCATGCATTTGTACACAATCAGAATTCGGTCAATTGTTTTCCTTCGTTGTCTTATGATTCTAATGATCTTACTCTTGCTTTAGCTAGGCTTCATAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGAAAACCAAGCCAACTCAAACATAAACATAAACACAAACACAAACATAAACACCTCATGTGCTGTTCTTAACAATCATGGTATGAACCATTCATCAAACAATCATGGATTCTTTGAAGCACTCATGGGATCTCAAAACAGTGTGCAGAATCTGTACTACGGATATGGGAATAGGGACATGGGGGAAGTGGATAATGGCAATGTTAGTGGTGAGATGATGTTGCCTTATGATAATGAAATGAGTATTGCAACAACTCAAGCAGTGACGGTAACTACCATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCGTGGCAGCTCAATAATGGAGATTCAAACATGGCTGAAATTGATCACTCAGGAAGAGCTGGTTGGAATGGTCTCACTTCACCTTGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 897 0.388 MDSSSEQHQQMSNQSLESMLTCSKGEQDKKVKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSPASRRIQDHAFVHNQNSVNCFPSLSYDSNDLTLALARLHKGQLGFDHEHDFSILENQANSNININTNTNINTSCAVLNNHGMNHSSNNHGFFEALMGSQNSVQNLYYGYGNRDMGEVDNGNVSGEMMLPYDNEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQLNNGDSNMAEIDHSGRAGWNGLTSPWHGLLNSPLM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00638 298 MobiDBLite consensus disorder prediction 1 37 - -
Vifa6g00638 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 206 IPR045174 GO:0003700|GO:0006355
Vifa6g00638 298 MobiDBLite consensus disorder prediction 23 37 - -
Vifa6g00638 298 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g00638 298 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Vifa6g00638 298 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Vifa6g00638 298 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00638 Vifa-Chr6 242262565 242263690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00638 6 298 C2C2-Dof Transcription Factor Family AT2G28510 38.024 2.70e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa6g00638 zf-Dof 9.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00638 - - gmx:100799737 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01473 1 241462697 241463666 Vifa6g00638 6 242262565 242263690 PCT