Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03406 ATGCCGGCAGGACATGGGTTGCAATCTCGCACCAGGGATTCATTTTCACGCCCATTCAGGAAGAAGGGGGTAATCGCCCTAGCAACGTACCTCCGAACATACAAAATCGGCGATTATGTTGATGTTAGAGTTAACGGCGCAATTCACAAAGGTATGCCTCACAAGTTCTACCACGGTCGTACCGGTCGTGTCTGGAACGTCACCAAACGCGCCATCGGTGTCAAGGTTAACAAGCAGGTTAGGAATAAGATTCTGAGGAAGAGAATTCATGTGCGTGTGGAGCATGTGATGCCTTCAAGGTGCACTGAGGAGTTTCGTTTGAGGAAGATTCAAAATGATAAGCTCAAGGCTGAGGCGAAGGCGAAGGGTGAGGTTATTAGCACGAAGCGCAAACCGGAAGGACCTAAGCCTGGTTTCAAGGTTGAGGGAGCTACTTTGGAAACGGTTACTCCAATTCCTTATGATGTGGTTAATGATTTGAAGGGAGGGTATTAG 495 0.4828 MPAGHGLQSRTRDSFSRPFRKKGVIALATYLRTYKIGDYVDVRVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVKVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIQNDKLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03406 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Vifa5g03406 164 Gene3D - 99 156 - -
Vifa5g03406 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 163 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vifa5g03406 164 FunFam 60S ribosomal protein L21 1 98 - -
Vifa5g03406 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Vifa5g03406 164 FunFam 60S ribosomal protein L21 99 158 - -
Vifa5g03406 164 MobiDBLite consensus disorder prediction 121 141 - -
Vifa5g03406 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Vifa5g03406 164 MobiDBLite consensus disorder prediction 121 137 - -
Vifa5g03406 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03406 Vifa-Chr5 1119471110 1119471682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03406 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 81.098 8.41e-101 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03406 K02889 - gmx:100305629 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03406 5 1119471110 1119471682 Vifa5g03406 5 1119471110 1119471682 ECH