LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g02220	ATGGGACTCTGTCATGGAAAACCCATTGAAGCTTCACATACAGAAACACAAATTTCAACCTCCGCAAACGATGAAACTCTTGAACTTCCACCACCAACACCACTAACAACCACAATTCATCATGCATCAACTAAATCATCTTCAAAATTCCCCTTTTTCAGTCCTAGTCCTTTACCCAGCTTCTTCAAACACTCACCAGCAAATTCTAATTCCAATTCAAATAGTGTCAGTTCAACTCCTCTTCGGATCTTTAAGCGGCCCTTTCCTCCTCCGTCTCCGGCGAAGCACATTCGGGCCCTGCTTGCTAAACGACATGGCTCTGTCAAGCCGAATGAGGCTACCATACCGGAAGGAAGTGAGTGTGAAGTTGGCTTGGATAAGAGTTTTGGATTTTCGAAGCAGTTTGGGGTTAGTTTTGAGATTGGTCAAGAAGTGGGGCGTGGCCATTTTGGGTATACTTGTTCTGCTAAGGGGAAAAAAGGAAGCTTTAAGGGGATTGATGCTGCTGTTAAAGTCATTCCTAAATCTAAGATGACGACAGCAATTGCGATAGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTGACTGGTCATCCGAATCTGGTACAATTCTATGAAGCCTATGAAGACGATGAAAATGTTTATGTAGTTATGGAATTATGCAAAGGAGGTGAATTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTATTCAGAAGAGGATGCTAGAGTTGTTTTGATTCAAATATTAAGTGTAGTAGCTTACTGTCATCTCCAGGGTGTTGTCCACCGTGATCTCAAGCCAGAGAATTTTCTTTTTAGTTCCGAGGATGAAAATTCTACACTGAAGGCAATTGACTTTGGACTCTCTGACTATGTAAAGCCAGATGAGAGATTGAACGATATTGTTGGAAGTGCATATTACGTTGCACCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATCCTGTTATGTGGAAGCCGGCCTTTTTGGGCCAGGACAGAATCTGGCATATTTCGGACTGTACTTAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCGGCTGATGCAAAAGATTTTGTAAAGAGGCTGCTGAATAAAGATTTTCGTAAAAGATTAACTGCGTCTCAGGCTCTCAGTCATCCATGGCTGGTAAATCACTTAGAGGACAGAAAGATTCCGTTTGATATGGTAATCCACAAGAACGTCAAAGCATACATAGGCTCATCTTCTTTACGCAAATCAGCGTTAGGGGCTGTTGCAAAGACATTGACATTAGTGCAGCTAGCATATCTCAAAGAACAATTTACTATTTTAGGGCCAAACAAAAGTGGGCTCATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGCGCCACTGATGCCTCGAAGGATTCACGGGTCTTAGATTATGTGAACATGGTTAGCTCAATCCAATATCGAAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTGGAGGGAATGGAAGTTTGGGAGCGACATGCAAGGCGTGCCTACGATCTTTTTGAGAAGGATGGAAATAGACCCATCATGATTGAAGAGCTTGCCTCGGAACTTGGACTTGGCCCCTCGGTACCTATTCATACGGTACTCCAAGATTGGATAAAACACTTTGACGGAAAGCTTAGTTTCTTAGGGTTTGTCAGACTCCTGCACGGAGTTTCAACTCGCGGACTCCACAAGGCATGA	1782	0.4265	MGLCHGKPIEASHTETQISTSANDETLELPPPTPLTTTIHHASTKSSSKFPFFSPSPLPSFFKHSPANSNSNSNSVSSTPLRIFKRPFPPPSPAKHIRALLAKRHGSVKPNEATIPEGSECEVGLDKSFGFSKQFGVSFEIGQEVGRGHFGYTCSAKGKKGSFKGIDAAVKVIPKSKMTTAIAIEDVRREVKILRALTGHPNLVQFYEAYEDDENVYVVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEAPWPSLSADAKDFVKRLLNKDFRKRLTASQALSHPWLVNHLEDRKIPFDMVIHKNVKAYIGSSSLRKSALGAVAKTLTLVQLAYLKEQFTILGPNKSGLISMQNFKTAILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMEVWERHARRAYDLFEKDGNRPIMIEELASELGLGPSVPIHTVLQDWIKHFDGKLSFLGFVRLLHGVSTRGLHKA	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g02220	593	SUPERFAMILY	EF-hand	431	584	IPR011992	-
	Vifa5g02220	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	263	275	IPR008271	GO:0004672\|GO:0006468
	Vifa5g02220	593	FunFam	CDPK-related kinase 1	439	511	-	-
	Vifa5g02220	593	Gene3D	-	425	584	-	-
	Vifa5g02220	593	Gene3D	Phosphorylase Kinase; domain 1	141	228	-	-
	Vifa5g02220	593	MobiDBLite	consensus disorder prediction	1	41	-	-
	Vifa5g02220	593	MobiDBLite	consensus disorder prediction	12	41	-	-
	Vifa5g02220	593	FunFam	Calcium-dependent protein kinase SK5	311	405	-	-
	Vifa5g02220	593	SUPERFAMILY	Protein kinase-like (PK-like)	139	416	IPR011009	-
	Vifa5g02220	593	Pfam	Protein kinase domain	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g02220	593	PANTHER	SERINE/THREONINE-PROTEIN KINASE	128	562	-	-
	Vifa5g02220	593	ProSiteProfiles	Protein kinase domain profile.	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g02220	593	CDD	STKc_CAMK	139	400	-	-
	Vifa5g02220	593	ProSitePatterns	Protein kinases ATP-binding region signature.	145	171	IPR017441	GO:0005524
	Vifa5g02220	593	SMART	serkin_6	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g02220	593	Gene3D	Transferase(Phosphotransferase) domain 1	229	424	-	-
	Vifa5g02220	593	FunFam	CDPK-related kinase 1	132	227	-	-
	Vifa5g02220	593	FunFam	CDPK-related kinase 3	131	303	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g02220	Vifa-Chr5	736596658	736601276	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g02220	1	590	EF-hand Containing Proteins	AT3G50530	63.807	0.0	824

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Vifa5g02220		Pkinase	8.3e-69	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa5g02220	5	736596658	736601276	Vifa5g02220	5	736596658	736601276	ECH
	Vifa3g04940	3	1433158002	1433161500	Vifa5g02220	5	736596658	736601276	PCT