Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00954 ATGGTTTATACTTCTCTTCCATCATATATGGATCCAACCAATTGGCATCAACAGCAACAAAATCATCATCAAGTGGCTAACGGTAATAGTGTCAACGCTCCTTTTCTTGTTAACTCACCACAGCCTCTACCATCGAACCTGACACCATCGCAGCCACATGAAAGCTCGATTAGGCCAGGTTCGATGGCAGATAGGGCAAGGATGGCAAACATACCTATGCAAGAACAGTTGCAAAAATGTCCAAGGTGTGATTCAACCAACACAAAGTTTTGCTACTTCAACAACTACAGTCTCTCACAGCCTCGCCACTTCTGCAAGACCTGCAGAAGGTATTGGACAAGGGGCGGCGCGCTTAGAAGTGTCCCGGTCGGCGGTGGCTGCCGAAGAAACAAAAGAACCAAGTCAAGCAGTAACAACACCTCCAAGTCACCGGTCAGCTCCGATCGTCAAACCACCTCGGCAAACAACTCTCCGGCAGTACTCAGCTCCCAGACGCCACCGCCGATGAGATTCATGTCTCCTTTACATCATCTCGGCGATCATCACCTCGGTGAAATAGGTCTAAACTATAATTTTCCTACTCAAATGGGAGGTATAGGAGACTTGAATTTCCATATTGGAAGCGTCGGCGGTGGTAAAAGTGGTGGTTCTGCTTCGATTTTACCTACGGGTAACTTCGAGCAATGGAGAATGCCACAAACTCATCAATTTCCCTTCTTAACAAGCTTAGAACCTTCTTCTTCACATGGATTGTTGTATCCATTTGGTAATGATCAAGAACACGCATATGGTGGTGTCTCTAAGGTATTAACAGCTTCTAGTGTGAAAATGGAAGAGAATCAATCTAAACAATTCTTGGGAATGATCAACAACAACAATAACAATAATAATAATCATAATAGTGAACAATATTGGAATGCTTCTAATGATGGTGGTGGTGCTACTTCAACTTGGAATGATCTTTCACCTTTTAACTCTTCTTCAGCTACTACAAATTCCAACTATAGAACTTAA 1014 0.4339 MVYTSLPSYMDPTNWHQQQQNHHQVANGNSVNAPFLVNSPQPLPSNLTPSQPHESSIRPGSMADRARMANIPMQEQLQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSSNNTSKSPVSSDRQTTSANNSPAVLSSQTPPPMRFMSPLHHLGDHHLGEIGLNYNFPTQMGGIGDLNFHIGSVGGGKSGGSASILPTGNFEQWRMPQTHQFPFLTSLEPSSSHGLLYPFGNDQEHAYGGVSKVLTASSVKMEENQSKQFLGMINNNNNNNNNHNSEQYWNASNDGGGATSTWNDLSPFNSSSATTNSNYRT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00954 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 306 IPR045174 GO:0003700|GO:0006355
Vifa5g00954 337 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Vifa5g00954 337 MobiDBLite consensus disorder prediction 30 57 - -
Vifa5g00954 337 MobiDBLite consensus disorder prediction 122 169 - -
Vifa5g00954 337 MobiDBLite consensus disorder prediction 289 337 - -
Vifa5g00954 337 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Vifa5g00954 337 MobiDBLite consensus disorder prediction 130 169 - -
Vifa5g00954 337 Pfam Dof domain, zinc finger 76 132 IPR003851 GO:0003677|GO:0006355
Vifa5g00954 337 MobiDBLite consensus disorder prediction 30 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00954 Vifa-Chr5 281787543 281788706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00954 1 327 C2C2-Dof Transcription Factor Family AT2G37590 37.396 2.19e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa5g00954 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00954 - - tpra:123888034 496.893