Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00350 ATGGTCTTCCCCTCTCTTCCAATCTATCTAGATCCAACCAACTGGTCACAACAGCAAGCAGGAATTGACATTGGAACTCAAAATCCGTCCTCTATACAGCAGTCTTCAGCTTCAACTGTAGCAGCTGTGACTGTGACAGTTGAAGCTGATGACAACTATCAAAGGTCTATAAGACCAAGATCAATGACGGATCAAGCTAGGATGTTCAAGATAAACCAAAACGATGCCGCCGCTGGTGCAGTACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTCTGTTATTACAACAACTATAGTTTATCGCAGCCACGCCATTTTTGCAAAGCTTGTCGTCGTTATTGGACTAGAGGTGGTGCACTTAGAAATGTTCCTGTTGGAGGTGGTTGTAGAAGGAATAATAAAAGAACCAGAGGAAGTTCAGTATCAAAACCGCCGTCTAAACCTAATCGAAGTAATGATCATCGTCAGGTCGGTACAGGTGCTATTGCAGGGGGTGGTTCTAGCTCAGAAAATGCAAAATCTAATGGATGCAATAATTCCAATGTGAATATGGGAATGTCTCATTTTCCAACTCAATTCCCATTTTTTCCCTCTTTGCATCATTATAACAACAATGACTATGTTTCTCAAGGCATTAGTTCTATGGTGGCAAAAAATATTACCAATAGTACTAATAATACTACTACTGTTGAGTTTCAACTTGGTAGAGATTCTTCAGTTGGTAATAATGATAATGGAGGTTCTTTGATGTTATCAAATGGAATTGGTGAACAATGGCGGTTTCTGAATCCGCTACAAGTTCATCATCAACAACAACAACAATTTCCTTTCATGACAAATGTGGAACCACAAATTGGATTATTCCAATTTGGTGGAGAAAATAATGGTGAAACTCCAAGAAGTTATATAAGTTCTAAGGCAATGGAATCTTCAAGTGCTAGTAATGGAATGGTGAAAATGGAAGAAAACAATCATCAAAGTTTGAGTTTGTCAAAGAATCTCTTGAGTGGTTCAGGAAATAGTAATGATCTATTTTGGAATGAAGTTCCTAGTTTCACTCCTTCATCAAGTCAGTTATTATGA 1089 0.3802 MVFPSLPIYLDPTNWSQQQAGIDIGTQNPSSIQQSSASTVAAVTVTVEADDNYQRSIRPRSMTDQARMFKINQNDAAAGAVQKCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNNKRTRGSSVSKPPSKPNRSNDHRQVGTGAIAGGGSSSENAKSNGCNNSNVNMGMSHFPTQFPFFPSLHHYNNNDYVSQGISSMVAKNITNSTNNTTTVEFQLGRDSSVGNNDNGGSLMLSNGIGEQWRFLNPLQVHHQQQQQFPFMTNVEPQIGLFQFGGENNGETPRSYISSKAMESSSASNGMVKMEENNHQSLSLSKNLLSGSGNSNDLFWNEVPSFTPSSSQLL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00350 362 MobiDBLite consensus disorder prediction 135 178 - -
Vifa5g00350 362 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Vifa5g00350 362 MobiDBLite consensus disorder prediction 126 178 - -
Vifa5g00350 362 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Vifa5g00350 362 MobiDBLite consensus disorder prediction 294 319 - -
Vifa5g00350 362 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Vifa5g00350 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 299 IPR045174 GO:0003700|GO:0006355
Vifa5g00350 362 MobiDBLite consensus disorder prediction 296 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00350 Vifa-Chr5 61947756 61949103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00350 1 139 C2C2-Dof Transcription Factor Family AT2G37590 48.667 1.48e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa5g00350 zf-Dof 7.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00350 - - cam:101502096 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00350 5 61947756 61949103 Vifa5g00350 5 61947756 61949103 ECH