Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00246 ATGGATATGAATCATAGAGAAGCAGTTTTTGTTATGTTTGCATTTATGTTGTTTGCATGGGGGAATAATGCACAAGATGATGAAACACTTGTTCCAGCAATCATAACATTTGGTGACTCTGCTGTTGATGTTGGGAATAATGACTATCTTTATACTCTTTTCAAAGCTAACTATCCTCCTTATGGAAGAGACTTTGCTAACCATAAACCTACCGGAAGATTTTGCAATGGAAAATTAGCTACTGATATTACCGCTGAAACGCTAGGTTTTAAGAGTTATGCGCCCGCGTATCTTAGCCCTCAAGCAAAAGGGAAGAACCTTCTTATTGGAGCGAATTTCGCTTCGGCTGCATCTGGTTACGATGAAAAGGCTGCCATTTTGAATCATGCGATTCCGTTGTCGCAACAGTTAAAATACTACAAGGAATACCAAAGCAAGCTTGCAAAGATAGCTGGTAGAAAAAAAGCAGCATCAATTCTTAAAGGTGCATTGTACCTATTGAGTGGTGGAAGTAGTGACTTTGTACAAAACTATTATGTGAATCCTATAGTCAACAAAGTTGTTACTCCTGATCAATATTCTGCATATCTTGTGGATGCATTCTCAAGTTTCGTTAAGGATTTGTATAAATTGGGAGCTAGAAAAATTGGAGTGACCTCACTTCCACCACTAGGGTGCTTACCTGCTACAAGAACTTTATTTGGATTCCATGAGAAAGGTTGTGTCACAAGAATCAATAATGATGCACAAGGATTTAACAAGAGAATGAACTCGGCCGCAGGGAAACTTCAAAAGCAACTTCCTGGTCTTAAGATTGTTGTGTTTAACATTTACAAACCTCTCTATGAACTTGTTCAATCCCCTTCAAAATTCGGTTTTGCGGAGGCAAGGAGAGGCTGCTGTGGTGTTGGGACCGTAGAGACAACATCCTTGTTGTGCAATCAACATTCATTAGGAACTTGTTCTAATGCAACACAGTATGTGTTTTGGGACAGTGTTCATCCTTCACAAGCTGCTAATCAAGTTCTGGCTGATGCATTGATTGAACAAGGCATAAGCCTTATCACTTAA 1071 0.3931 MDMNHREAVFVMFAFMLFAWGNNAQDDETLVPAIITFGDSAVDVGNNDYLYTLFKANYPPYGRDFANHKPTGRFCNGKLATDITAETLGFKSYAPAYLSPQAKGKNLLIGANFASAASGYDEKAAILNHAIPLSQQLKYYKEYQSKLAKIAGRKKAASILKGALYLLSGGSSDFVQNYYVNPIVNKVVTPDQYSAYLVDAFSSFVKDLYKLGARKIGVTSLPPLGCLPATRTLFGFHEKGCVTRINNDAQGFNKRMNSAAGKLQKQLPGLKIVVFNIYKPLYELVQSPSKFGFAEARRGCCGVGTVETTSLLCNQHSLGTCSNATQYVFWDSVHPSQAANQVLADALIEQGISLIT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00246 356 PANTHER GDSL ESTERASE/LIPASE EXL3 13 347 - -
Vifa5g00246 356 SUPERFAMILY SGNH hydrolase 34 349 - -
Vifa5g00246 356 Gene3D SGNH hydrolase 22 352 IPR036514 -
Vifa5g00246 356 Pfam GDSL-like Lipase/Acylhydrolase 34 346 IPR001087 GO:0016788
Vifa5g00246 356 CDD SGNH_plant_lipase_like 32 348 IPR035669 -
Vifa5g00246 356 FunFam GDSL esterase/lipase APG 23 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00246 Vifa-Chr5 34569444 34570863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00246 32 350 Pollen Coat Proteome AT1G75910 34.161 1.28e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00246 - - gmx:100795716 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00246 5 34569444 34570863 Vifa5g00246 5 34569444 34570863 ECH
Vifa5g00246 5 34569444 34570863 Vifa4g01413 4 418890580 418892572 PCT