Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04210 ATGGCTAAATTCTCCTCTAAACTCTTCCTTCTCTTAACAATCTTCTACTCAACCACTTCATCTTTCACCAACTCATCAACACTACATTCAAAAATCACTTCACTAAAATCCTTCTGCAAAACCACTCCACACCCTGAACTTTGCTTCAACTCATCAAAACTTTCCATCTCAATAACCATAAACCCAACCATCATCAACATCCTTCTTCATTCCCTTCAACTATCAATATCCGAAACCACCAAACTATCTAACCAATTCAACAATGCTGCACAACAGCACTCAAACATCATAGAAAACAAAAGAGGAGTGTTACAAGATTGCAAAGAGCTTCATCAATCAACCTTAACTTCCTTGAAAAGATCACTATCTGGAATCACTTCCTCAAACACTAGAAACTTAGTTGATGCAAGAACTTATCTCAGTGCAGCAGTTACCAACAAGAACACATGTTTAGAAAGCTTAGATTCTGCTTCAGGTACAATGAAGCAAGTTCTAGTTGATTCAGTGATCAACACTTACAAACATGTTAGTAATTCTCTGGCAATGCTTCCTAAGCCTGAGATCAGAGCTTCGAGAGGACGTGAAAAACGGCGTTTAATCGATGCTGTATCGTGGTTGTCGAGAAAAGATCGTGGTCGGTTGTTGCAAAGTACTGATGGTGTGCTTGTTGTGGCTGCTGATGGAAGTGGAAACTTTAGCACCATCAATGATGCCATTAACTTTGCTCCGAATAACAGCTATGATAGGACAATAATCTATGTGAAACAAGGTGTGTATGAAGAAAATGTTGAAATTTTGAGTTATAAAACCAATATTGTTCTACTTGGTGATGGAAGTGATGTTACTTTCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACTACATTCAGATCTGCAACTTTAGCGGTTTCTGGTGAAGGCTTTCTAGCGCGCGATATAGCTTTTGAAAACAAGGCAGGACCGGAGAAGCATCAAGCAGTTGCTCTAAGAGTGAATGCAGACTTAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCACTCCTTTAGACAATTCTACCGCGAATGTGACATTTTCGGGACCATAGATTACATATTCGGAAATGCAGCAGTAGTTTTCCAAGCATGTAATATTGTCTCAAGAATGCCGTTAGCCGATCAATTCACTGTCATCACAGCACAGTCAAGAGATTCTCCTGATGAAGACACCGGCATCTCAATTCAAAACTGTTCAATTTTAGCTACTACTGATTTGTATAACAACTCTAACAACATCAAGAGTTACCTTGGAAGGCCTTGGAGGGCTTATTCTAGGACTGTTTTCATTGAGTCTTACATTGATGTGTTTATTGATCCAATGGGATGGACAAAGTGGTCTTCTTCTCATGATGAACAAGAATTGGACACTTTGTATTATGGAGAGTTTGCAAACTATGGACCCGGTTCTGCGACCGATAACCGAGTTGAATGGTTAGGATACCATTTAATGGATTTTGATAGTGCATATAATTTCACTGTTTCTGAGTTCATCATTGGTGATGCTTGGATTGGATCTACTTCATTTCCTTACGATGAAGGGATTTGA 1605 0.39 MAKFSSKLFLLLTIFYSTTSSFTNSSTLHSKITSLKSFCKTTPHPELCFNSSKLSISITINPTIINILLHSLQLSISETTKLSNQFNNAAQQHSNIIENKRGVLQDCKELHQSTLTSLKRSLSGITSSNTRNLVDARTYLSAAVTNKNTCLESLDSASGTMKQVLVDSVINTYKHVSNSLAMLPKPEIRASRGREKRRLIDAVSWLSRKDRGRLLQSTDGVLVVAADGSGNFSTINDAINFAPNNSYDRTIIYVKQGVYEENVEILSYKTNIVLLGDGSDVTFITGNRSVVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADLTAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVFQACNIVSRMPLADQFTVITAQSRDSPDEDTGISIQNCSILATTDLYNNSNNIKSYLGRPWRAYSRTVFIESYIDVFIDPMGWTKWSSSHDEQELDTLYYGEFANYGPGSATDNRVEWLGYHLMDFDSAYNFTVSEFIIGDAWIGSTSFPYDEGI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04210 534 CDD PMEI-like_3 37 182 - -
Vifa4g04210 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 185 IPR035513 -
Vifa4g04210 534 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Vifa4g04210 534 Pfam Plant invertase/pectin methylesterase inhibitor 35 182 IPR006501 GO:0004857
Vifa4g04210 534 Gene3D - 221 534 IPR012334 -
Vifa4g04210 534 SUPERFAMILY Pectin lyase-like 218 532 IPR011050 -
Vifa4g04210 534 FunFam Pectinesterase 216 534 - -
Vifa4g04210 534 NCBIfam pectinesterase inhibitor domain 5 182 IPR006501 GO:0004857
Vifa4g04210 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 183 IPR035513 -
Vifa4g04210 534 Pfam Pectinesterase 222 520 IPR000070 GO:0030599|GO:0042545
Vifa4g04210 534 PANTHER PECTINESTERASE 16 524 - -
Vifa4g04210 534 SMART PMEI_2 30 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04210 Vifa-Chr4 1341181779 1341183768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04210 21 534 Carbohydrate Esterase AT2G26440 62.382 0.0 666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00163 2 19451923 19454041 Vifa4g04210 4 1341181779 1341183768 PCT