Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03460 ATGCAAGAAATACATTCCATCGGCGGTAGTGGTACCGGTACCAGGTTCTTCGGCGGCGGAGGCGGTGACCGGAGACTCAGGCCACATCTCAACAACAACAATCCGAACAACCAAGCCTTGAACTGTCCTCGCTGCGACTCCGTCAATACCAAATTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGTCATTTCTGCAAAAACTGCCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCTGTCGGTGGCGGTTGCCGTAAATCCAAACGCTCAAACAAGCCGAAAAACTCTTCCTCATCGGAAATCGCTGATTTGCCGACATCTCCACCGGAACCGGAGAACAAATCGAACTCTCACTCAAGCAGCGAGAGTTCCAGCCTCACCGCCGCCGCGGTAACTGATTCAGTCTCAGAACCAACTCCACCAACCTCCAACACGAAAATCAACACTGGTTTGGAGATTGATTCACTGGAACAACAAGGAACAGGAGATTGCGGTATTTTCTCAGAGATTGCAACTTTCACAAGCTTGATCACTTCCTCCAACGATACATTACCGTTTGGATTCGGTCACGGTAACAGTAACTGTAACGTTAACGGTTTCGCCGATGCATCGTCGTTTAACTGGCAACATCAAAAGGTGATGACCGTTACCGGCGATCAGCCTCATCAACACGAAGATGCATTGAAGTTGTTACCGGAGAATCTCGGTACAGGTGGTGGTTCTTCTGGATCGTTGATGGACCACGGTATTGATTTCTCTGTGCTGCAGAGCAAAACAAGCAACGGTGGATTTGGATCGTTGGATTGGCATGGTGCAGATCAAGGTTTGTTCGATCTTCCTAACACCGTTGATCATGGTTACTGGAATCACACTCAATGGTCTGATCATGATCAGGATCAGGATCATTCCACTCTCTTTCATCTTCCATGA 945 0.4899 MQEIHSIGGSGTGTRFFGGGGGDRRLRPHLNNNNPNNQALNCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKNSSSSEIADLPTSPPEPENKSNSHSSSESSSLTAAAVTDSVSEPTPPTSNTKINTGLEIDSLEQQGTGDCGIFSEIATFTSLITSSNDTLPFGFGHGNSNCNVNGFADASSFNWQHQKVMTVTGDQPHQHEDALKLLPENLGTGGGSSGSLMDHGIDFSVLQSKTSNGGFGSLDWHGADQGLFDLPNTVDHGYWNHTQWSDHDQDQDHSTLFHLP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03460 314 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Vifa4g03460 314 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Vifa4g03460 314 MobiDBLite consensus disorder prediction 85 153 - -
Vifa4g03460 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 208 IPR045174 GO:0003700|GO:0006355
Vifa4g03460 314 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Vifa4g03460 314 MobiDBLite consensus disorder prediction 99 153 - -
Vifa4g03460 314 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03460 Vifa-Chr4 1084169982 1084170926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03460 23 305 C2C2-Dof Transcription Factor Family AT5G60850 43.974 1.29e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g03460 zf-Dof 6.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03460 - - mtr:25493917 386.726