Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03038 ATGGCTGCAATTCATCAATATTGTAGCTTGTGGAATATAATTACGATTACATTGATGCTCACAATTATCGCTAAACCTTCCGTAGTAACATGCACATTTCAACCAAGTCCATGGACTCTTGCTCATGCCACATTTTATGGCGACGAAACTGCTTCCGCCACCATGGGAGGGGCATGTGGGTATGGAAATTTGTTTGTCAACGGGTATGGGACAGACACAGCAGCATTGAGTTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGTGTCCAATCGAAGTTCTGTAACACCAACGTGCCTTACACTACAGTCACTGCCACCAACCTTTGCCCTCCTAGTTGGTCTCAAGCATCTGATAATGGTGGATGGTGCAACCCACCACGTTCACATTTTGATATGTCTAAACCCGCTTTCATGAAAATCGCACAGTGGAAGGCTGGTATCGTCCCTATTATGTATCGCAGAGTACGTTGCGCAAGAAAGGAAGGATTTCGATTCTCCTTCCAAGGAAATGGGTATTGGTTATTAGTCTACGTGATGAATGTGGGAGGTGGAGGTGATATAGCCAACATGTGGGTGAAAGGAAGCAGAACAGGATGGATTAGCATGAGTCACAATTGGGGTGCTTCTTATCAAGCATTTGCAACACTTGGGGGCCAAACACTTTCTTTCAAGGTTACTTCTTACACAACCAAAGAAACTATAATTGCATGGAATGTTGCTCCTTCCAATTGGAGTCCTGGATTAACCTATTCTACTCCTACAAACTTCCATTGA 795 0.4314 MAAIHQYCSLWNIITITLMLTIIAKPSVVTCTFQPSPWTLAHATFYGDETASATMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSKFCNTNVPYTTVTATNLCPPSWSQASDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPIMYRRVRCARKEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLGGQTLSFKVTSYTTKETIIAWNVAPSNWSPGLTYSTPTNFH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03038 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Vifa4g03038 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Vifa4g03038 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Vifa4g03038 264 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Vifa4g03038 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Vifa4g03038 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Vifa4g03038 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Vifa4g03038 264 SUPERFAMILY PHL pollen allergen 167 258 IPR036749 -
Vifa4g03038 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Vifa4g03038 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Vifa4g03038 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Vifa4g03038 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Vifa4g03038 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Vifa4g03038 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Vifa4g03038 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vifa4g03038 264 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
Vifa4g03038 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Vifa4g03038 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Vifa4g03038 264 Gene3D - 23 165 IPR036908 -
Vifa4g03038 264 CDD DPBB_EXPA_N 37 164 - -
Vifa4g03038 264 Gene3D - 169 264 IPR036749 -
Vifa4g03038 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Vifa4g03038 264 PANTHER EXPANSIN-A15 19 259 IPR002963 GO:0009664
Vifa4g03038 264 SMART dpbb_1 73 159 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03038 Vifa-Chr4 979218966 979220149 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03038 4 979218966 979220149 Vifa4g03038 4 979218966 979220149 ECH
Vifa4g03038 4 979218966 979220149 Vifa1g07817 1 1220737081 1220738038 PCT