Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02555 ATGGCAGGGTTGGTTGAAGGGGCTCTTGTTGGTGCAGTCATTCAAGAAGGGGCAAAACCCATCACAAACCAGATATCCAAAGCTTTCTGTTTCAAAACCACCCGCAGAAACCTAGACTCTCTTGTGGGTCGTCTCATGCCATTTGCTGAAGAAATTAAACTGTTAGAAGAGGATTCGGATCCTCCAAACCGAGAACCAGAGAGCCTAATTCAAGAATTGAAACAAGGGAAGGAGTTAGTTAACAAATACTCCAAAGTCCCTTGGTGGAAATTTTGTTTTCTACCTTTTTACCAAGGAAAGCTTCAAGCTTTGGAAGAGAAAATTGTTAGATCCATTACCCTTGTTACCGCAATTACTACGGCAAGGGATGTTAAAAGAGCAAACTCCTTAGTCACTGATAAGGGGAGACAATTCAACAAGTTGTGTGATCCTCCTGTAAAACCTCATCACACTGTTGGGTTGGATTTTCTTTTGAATCATTTGAAGAATTGGGTGCTCGGTAAAGATGGGTCTGTACGTGTGTTAACTGGCTTGCCTAGATCCGGGAAAACCACTTTAGCTACGTTGCTATGTTGGGATGATCAAGTTAGAGGTAAATTTGGAAAAAATATATTCTTCTTGTCGAAAACTCCGAATTCAGAGAAGATTGTACAGAATTTGTTTCAACATTGTGGACATGATGAGCCTTGCCTCATAAAAAACGGGGATGCGGTGAAAGAATTGAGTAGCTTGCTGAAGAAAATTGGGGAAAGTTGTCCAGTGATGTTGGTTCTTGATAATGTTTGCCCAGGCTTAGAATCCTTTGTTGAGACATTACAGGTTCAGGTTCCATTTTGTAAAATTTTGATAATTTCTAGAGTTGTGTTTCCACGATTTGAAACATTGTTCGTAAGGCCACTTAGCATTGTTGATGCGGTTACCCTTTTCCGCCGCTTTGCATTACCAGATGATGGAAAAAGAGGAACTTATGTTCCTGATGAAGAATATGTACAACTGGTGGCAAACAGTTGCTGGGGTTCTCCAGAGGCCCTGATATTGACAGGTGGATCACTTCGTGGGCAACCTGTTGCGGTGTGGAGAAAAATGGTGAAGTTGTTGTCTAAAGGTCATTCTATTGCTTGTTCTAATCCTAATTTGCTTAATCTCCTGCAAAAAAATTTGGAGGATGCATTGGAAAATAATCCCATCATCAAGGAGTGCTTTATGGACCTTGGATTATTTTTTGAAGAGAAAAAAATACCTGTTGCTGCCCTCATTGACATATGGACAGAACTGAAGGACCTAGACGACGACAACATAGATGGAATGAACTTTGTTCATGAGTTAGATAACATGAATTTGGCTAATATTGTAGTTGCAAGGAAAGTGACAAGTCACGTCGACAACTACTACAACCACCATTTCCTTACTCAATATGACCTTCTTAAGGAGATGGCTCTTATTCAAGCTAGAAAGAAACCATATGAACAAAGGGAAAGGTTGATTTTTGACATTAATGAAAATAGTTGGGATCAACAAAACCAGCAAAATACCATTGCTCGAACATTATCCATATCAACTGACAAAATGTTGTCCTCAGATTGGAGCAATATTGTGAAAGTTGAACAAGTTGAGGTTCTGATTTTGAATCTTCATACTGATAACTATACCTTACCAGAGTGCTTAAAGGAAATGACTAAACTGAAAGTTTTGATAATCACCAATTATAACGGTTTCCGCTTCGCTGAACTAGACAATTTTGATATACTTGGTTGTCTACCCAATCTTAGAATAATCAGATTGCAACAGGTTTTAGTTCCTTCCCTTTGCACATTGAAGAGTCTGCGAAAGTTGTCCCTTTACAATTGCAAAACAAGACATGATTTTCAAGGTGACACCATTTCACTTTCAGAGGTTCTCCCAAATCTCCAAGAGTTGTGTGTTGATTATTGCAAAGATTTAGTAACACTTCCTGTTGGGCTTTTTTATATTACTTCCCTCAAGAAGCTCAGTATCACAAGGTGCATAAAATTTCTTGCGCCGCTGCAAGAAATTGGAAACCTCGAGAATTTGAAAGTATTAAGACTTAGTTCTTGCGCTGAGTTGGGAGAAATACCAGCTTCAATTGGAAATCTTCATAAGCTACAATTTCTTGACATATCAGGTTGTGCAAGCCTTCACACTTTACCGGAAGAAATTGCAAATTTGCATAATCTTAAAGAGCTTCACATGACTGGCTTTTCAACATTGCCAGAATCAGTCACAAAACTTGAGACTTTAAAGTATTTAATATGTGACCAAGAGACTGCTGAATGTTGGCAACATTTCAAGCCTAGCCTTCCCAATCTAAAAATAGAGGAGGCTGAAATTAACTTATTCATTAGTGTATGA 2370 0.3882 MAGLVEGALVGAVIQEGAKPITNQISKAFCFKTTRRNLDSLVGRLMPFAEEIKLLEEDSDPPNREPESLIQELKQGKELVNKYSKVPWWKFCFLPFYQGKLQALEEKIVRSITLVTAITTARDVKRANSLVTDKGRQFNKLCDPPVKPHHTVGLDFLLNHLKNWVLGKDGSVRVLTGLPRSGKTTLATLLCWDDQVRGKFGKNIFFLSKTPNSEKIVQNLFQHCGHDEPCLIKNGDAVKELSSLLKKIGESCPVMLVLDNVCPGLESFVETLQVQVPFCKILIISRVVFPRFETLFVRPLSIVDAVTLFRRFALPDDGKRGTYVPDEEYVQLVANSCWGSPEALILTGGSLRGQPVAVWRKMVKLLSKGHSIACSNPNLLNLLQKNLEDALENNPIIKECFMDLGLFFEEKKIPVAALIDIWTELKDLDDDNIDGMNFVHELDNMNLANIVVARKVTSHVDNYYNHHFLTQYDLLKEMALIQARKKPYEQRERLIFDINENSWDQQNQQNTIARTLSISTDKMLSSDWSNIVKVEQVEVLILNLHTDNYTLPECLKEMTKLKVLIITNYNGFRFAELDNFDILGCLPNLRIIRLQQVLVPSLCTLKSLRKLSLYNCKTRHDFQGDTISLSEVLPNLQELCVDYCKDLVTLPVGLFYITSLKKLSITRCIKFLAPLQEIGNLENLKVLRLSSCAELGEIPASIGNLHKLQFLDISGCASLHTLPEEIANLHNLKELHMTGFSTLPESVTKLETLKYLICDQETAECWQHFKPSLPNLKIEEAEINLFISV 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02555 789 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 3 127 IPR008808 -
Vifa4g02555 789 Gene3D Ribonuclease Inhibitor 477 775 IPR032675 -
Vifa4g02555 789 PRINTS Disease resistance protein signature 172 187 - -
Vifa4g02555 789 PRINTS Disease resistance protein signature 679 695 - -
Vifa4g02555 789 PRINTS Disease resistance protein signature 337 351 - -
Vifa4g02555 789 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 781 IPR039203 GO:0050832
Vifa4g02555 789 SUPERFAMILY RNI-like 527 776 - -
Vifa4g02555 789 Gene3D - 130 291 IPR027417 -
Vifa4g02555 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 404 IPR027417 -
Vifa4g02555 789 Gene3D - 386 476 IPR036388 -
Vifa4g02555 789 ProSiteProfiles RPW8 domain profile. 1 150 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02555 Vifa-Chr4 773854105 773857291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02555 602 769 Receptor kinase-like Gene Family AT4G36180 34.104 6.16e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02555 4 773854105 773857291 Vifa4g02555 4 773854105 773857291 ECH
Vifa1g07069 1 1091453862 1091461608 Vifa4g02555 4 773854105 773857291 PCT