Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02545 ATGATCCCAGAACTCTTTGGTAATGGTGCTAGTGCTTCCCTCATAGCAAGTGAAAGAAGCTACTCTTCCATTAATGGAGGAGTTGGAGGAGGACTTTTATTTCAACCAACAACAACACAATCTCCTTCTCCTCCTCCTTGTCCATCTTCCACAACCACCATCCCCACCACTACCTCTTCCACACCAGCAACTACCCCCTCATCTGAAAACCAACAAAGTCTGAGGTGTCCACGATGTGATTCTTCAAACACTAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAAACATGTCGTCGTTACTGGACTAAAGGCGGTGCTTTACGTAACGTCCCCATCGGAGGTGGCTGCCGGAAGAACAGAAACATTGGCGCGTCGAACAACCCTGCGAAAACCACAGCAAACAAGATGAAGACAGTTGCATCAGAGTTCATTGGAAGGTCAGCAAGTGGTCATGGGTTCGATCTCGAACATATTGTTCCACCACCAAGCCAAATCCTTTGGGGCTCTCCACAAAATTCTTATCTACTTTCGTTGCTAAGATCTAACCAAAACCCTAACCCTAACCTTGTGAAGGAAGAAGGGAATAACTTAATAGGATCCCATGTTTCTCACATGATGAGTACTTCTCAGCCGTTGGTTTCATCAAATGGTTATGATGGTATTGGACATGTTCTATGCAATCCATTTTGGAGAAACAATCATGATCAAACTCAACAATTACAAAACGGTGGCTTTGTACTTGGGGAACAACATCCTCAACATCAGCATCAAAGCAGTGAAATCCAAGAACTTTACCAGAAGCTAAGGTCTTCAACATCATCATCATCATCAGGTAATAATTATTGCACTGAGATTTCATCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCTAATACCATTTTGGAGACAACTTCACTTCCTGGTGGTGAACTAGGGTACTGGAATCCAATTCCAACTCTCACTTGGTCTGATCTTCCAACCACCAATGGTGCATATATCCATAACAGTAATAATTAA 1041 0.4332 MIPELFGNGASASLIASERSYSSINGGVGGGLLFQPTTTQSPSPPPCPSSTTTIPTTTSSTPATTPSSENQQSLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRNIGASNNPAKTTANKMKTVASEFIGRSASGHGFDLEHIVPPPSQILWGSPQNSYLLSLLRSNQNPNPNLVKEEGNNLIGSHVSHMMSTSQPLVSSNGYDGIGHVLCNPFWRNNHDQTQQLQNGGFVLGEQHPQHQHQSSEIQELYQKLRSSTSSSSSGNNYCTEISSSPTVLLGNVASNTILETTSLPGGELGYWNPIPTLTWSDLPTTNGAYIHNSNN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02545 346 MobiDBLite consensus disorder prediction 52 76 - -
Vifa4g02545 346 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 274 IPR045174 GO:0003700|GO:0006355
Vifa4g02545 346 Pfam Dof domain, zinc finger 72 128 IPR003851 GO:0003677|GO:0006355
Vifa4g02545 346 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Vifa4g02545 346 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Vifa4g02545 346 MobiDBLite consensus disorder prediction 32 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02545 Vifa-Chr4 772384629 772385669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02545 39 127 C2C2-Dof Transcription Factor Family AT5G65590 62.222 4.25e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g02545 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02545 - - psat:127074489 590.112