Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02538 ATGCCGTCATCGGACTCCGGTGAGAGCCGTCGATCAATCAAACCACAAACCCGCCCCGCTGCACCTGCACCAGAGCAAGAGAATCTCCCATGTCCTCGTTGCGATTCAACCAACACCAAGTTTTGCTACTACAACAACTACAACTACTCTCAGCCTCGTCATTTCTGCAAAGCTTGCCGTAGGTACTGGACTCACGGCGGTACTCTCCGGGACATCCCCGTCGGAGGTGGTACCAGAAAAAACGCCAAACGCTCTCGCACTCATCATGTTGCGGTTACTTCCTCGTCTTCCTCTTCCGCTGTCACATCCGCACCACCGTCTTTTCCGTATGGTTCTGTTGACGGTGAGGTAAAACAGAATATGAGTGTTTGCGGGAGCTTCACTTCGTTGTTGAACAACAACCATAACCCTCAGAACTCCGGGTTTCTGGCATTAGGTGGGTTCGGACTCGGGCTTGGACACGGGCTTGGAGATATGGGGTTTGGGATAGGGAGAGGGGAATGGAGTTTTCCTGGGATGATGGATGGATCCAACATGGGTGTGCCGGTTGTGTCTTCTGGTATCGGAAACTCGTGGCAGTTAGAAGGTGGCGAAACTGGTTTTGTGGGTGGTGACTGTTTCTCTTGGCCTGGACTTGCGATTTCTACACCGGGAAATGGTCTCAAATGA 669 0.5232 MPSSDSGESRRSIKPQTRPAAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRSRTHHVAVTSSSSSSAVTSAPPSFPYGSVDGEVKQNMSVCGSFTSLLNNNHNPQNSGFLALGGFGLGLGHGLGDMGFGIGRGEWSFPGMMDGSNMGVPVVSSGIGNSWQLEGGETGFVGGDCFSWPGLAISTPGNGLK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02538 222 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Vifa4g02538 222 MobiDBLite consensus disorder prediction 88 105 - -
Vifa4g02538 222 MobiDBLite consensus disorder prediction 74 105 - -
Vifa4g02538 222 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Vifa4g02538 222 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Vifa4g02538 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 138 IPR045174 GO:0003700|GO:0006355
Vifa4g02538 222 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02538 Vifa-Chr4 768858147 768858815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02538 1 222 C2C2-Dof Transcription Factor Family AT3G50410 49.035 7.18e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g02538 zf-Dof 8.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02538 - - cam:101488684 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02538 4 768858147 768858815 Vifa4g02538 4 768858147 768858815 ECH