Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02509 ATGGGTTGGCTTACCAAGTTGCTTAAGGGTTCGAACCATAAATATTCGGGGCGAGGATACAATGGGAAGTATGGACATGACAGAGATTCGAGTAATCGAGAACATTCCGTGGATGATTTGACTGATTTTGAGAGAGAAGAAATCGATCGTGCAATTGCGCTTTCCCTTTCCGAGGAAGATCCTAAAGGGAAAAAAGTTGTAGAGGATGATTCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGACGAAGAAGATGAACATGTTGGTGATGTTAAGCAAGACGAAGAAGACCATGTTGGTGATGTTAAGCAAGAAGAAGATGAAGATGACCATATAGCTAAAATTCAACAGGATGAAGACACGAGTCTCGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCAAGGGCTATTCAAGAAAGTTTGAGCATTGGTTCACCTCCTCGATCTCAGACCGATTCTATATTTCAACCTTTTACAAACCTCTTTCCACCTGTGTACAGAATCTGTGCTGGCTGCAATGTTGAGATAGGTCATGGAAGATTTTTGAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTGCCAATCACTGATTATGAGTATTCCATGTCTGGAAATCGCCCTTACCATAAATTGTGCTATAAGGAGCGTCATCACCCAAGGTGTGATGTTTGCAAGATCTTCATCCCACAAAATTCAGCTGGACTCATTGAGTATAGAGCGCATCCTTTCTGGCTGCAAAAATATTGTCCATCACACGAGGGTGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAATATCTGTTACTTGATGATGGTCGAAAGCTGTGCCTTGAATGTCTTGATTCGGCTATTATGGATACTCACGAATGTCAACCTCTTTATCTTGAAATACAAGAGTTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCGCTGAATGAAGCCATGGAGGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTCGAGGACTTTGCTTGTCAGAAGAGCAAACCATCCCCACTATTTTAAGAAGACCGAGTATAGGAGCAGGCTACCGTGTCATAGATATGATAACCGAGCCTTTTAGGCTGATACGTCGGTGCGAAGTGACAGCGATACTTGTATTGTATGGCCTTCCTAGGTTACTCACAGGATCAATCCTGGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGCTATGGCAATCTTAGGCCAGAAGTTGAAGAAGGAATATGCCAAGTCTTAGCTCATATGTGGTTAGATTCAGAGATCTATTCCGGCTCCGGAAGTGAAGAAGCATCATCATCGTCTTCCTCTTCTTCGTCTTCGTCATCACCTTCCTCGACTTCATCAAAGAAGGGTAAACGGTCGGATTTTGAAAAGGAACTCGGTAAATTTTTTAAACACCAGATCGAGTCCGATAGCTCACCAGCCTACGGAGACGGATTTAGAGAAGGTAACCAGGCAGTGCTTAAGTATGGACTTAGAAGAACCCTTGACCATATCCGAATCACCGGAAGCTTTCCGTAA 1620 0.4296 MGWLTKLLKGSNHKYSGRGYNGKYGHDRDSSNREHSVDDLTDFEREEIDRAIALSLSEEDPKGKKVVEDDSESEDDELCPLDDEEDEHVGDVKQDEEDHVGDVKQEEDEDDHIAKIQQDEDTSLDEVQLEEDEQLARAIQESLSIGSPPRSQTDSIFQPFTNLFPPVYRICAGCNVEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKLCYKERHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHEGDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSSSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIESDSSPAYGDGFREGNQAVLKYGLRRTLDHIRITGSFP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02509 539 MobiDBLite consensus disorder prediction 1 111 - -
Vifa4g02509 539 Pfam Protein DA1 320 534 IPR022087 -
Vifa4g02509 539 PANTHER PROTEIN DA1-RELATED 2 3 539 IPR045218 -
Vifa4g02509 539 MobiDBLite consensus disorder prediction 460 482 - -
Vifa4g02509 539 MobiDBLite consensus disorder prediction 460 487 - -
Vifa4g02509 539 MobiDBLite consensus disorder prediction 70 91 - -
Vifa4g02509 539 SMART lim_4 170 222 IPR001781 -
Vifa4g02509 539 SMART uim 43 62 IPR003903 -
Vifa4g02509 539 SMART uim 130 149 IPR003903 -
Vifa4g02509 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 253 - -
Vifa4g02509 539 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 130 149 IPR003903 -
Vifa4g02509 539 ProSiteProfiles LIM domain profile. 169 229 IPR001781 -
Vifa4g02509 539 FunFam Protein DA1-related 1 165 224 - -
Vifa4g02509 539 MobiDBLite consensus disorder prediction 20 69 - -
Vifa4g02509 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 196 - -
Vifa4g02509 539 Pfam LIM domain 171 226 IPR001781 -
Vifa4g02509 539 CDD LIM_DA1 171 223 - -
Vifa4g02509 539 ProSitePatterns LIM zinc-binding domain signature. 171 205 IPR001781 -
Vifa4g02509 539 Gene3D Cysteine Rich Protein 167 229 - -
Vifa4g02509 539 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02509 Vifa-Chr4 756904630 756907301 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g02509 DA1-like 2.8e-105 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02509 4 756904630 756907301 Vifa4g02509 4 756904630 756907301 ECH
Vifa4g02509 4 756904630 756907301 Vifa1g06987 1 1079008853 1079012346 ECH
Vifa1g06987 1 1079008853 1079012346 Vifa4g02509 4 756904630 756907301 PCT