Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02072 ATGGTTCCACCAAATAACAACAACACACAAAATCATGAAAACCACCAACAACAAGAGAATTCCTCTTCAGAATCCAAGAAACCAGATCAACAACAACAACAAAGAGTAGTTGTAAAATGTCCAAGATGTGACTCTTCCAACACAAAATTCTGTTACTACAACAACTATAGTCTCACTCAACCAAGACATTTCTGCAAAACTTGTAGAAGATATTGGACTAATGGTGGATCCTTGCGTAACGTTCCAATCGGCGGAGGTTGTAGAAAGAAACAAAAGCTCAAAAACTCATCTTTAACATCATCATCATCATCATCACCATTATCATCCATTTCTAAGTACTCTTCTTCACCTTCACTTGATTTTCATCTTGGTGGCTTATTACCCTTACCTTTACCATTACCCTTTACGTCAAAACCCTATTTCTATAACCAATTCCCTTCAAATTCAAACACTTGTGTTCCTACTACAAGTCCTTCAAGTTTTCATCTAGATCCATCTAGTACCTCAAATCCAATGATGGGTCTAAATTTATATCCTTTTTCTTCTACTTCAAATGGAAGTGGATTCATCAATGAAAATGCAATTCAAGGAATGAACTTTATGAATGTGAACACTAGTACTATTACTCCAACTACTAGTACTAGTACTAGTCTTGCTATTGAATCATTGAGTTGTATAAATCAAGATTTGCATTTGAAGCTTCAGCAGCAGCGATTAGCGACTATGTTCGGTGGAGATGATGAAAAGAAAGATGGTATTAGGGGAAATGATTTGGTTTCTCAGGTTAGCGGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTCGAGAATTCAAAGGCGGAAATGTTTCAAGGTGTTGGAGATGATGGTGATATGAGAAAAGCAGGTCCAAGTCCAAGTGAATGGTTCTTCGAGATGAATTCTTATTCGTCCGTGATGACTCCGACAAGAACTAATGATAGTGTTTGCATGAATGGTGATCATGATAATGGAAACTACATCAACAACAACTGGATTAACAATGGTGGTGTTCATGCTTGGAGTGATGTGCAGCAGCAGCAGCAGCTACCATACAGTGCTTTGCCCTAA 1092 0.3764 MVPPNNNNTQNHENHQQQENSSSESKKPDQQQQQRVVVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKNSSLTSSSSSSPLSSISKYSSSPSLDFHLGGLLPLPLPLPFTSKPYFYNQFPSNSNTCVPTTSPSSFHLDPSSTSNPMMGLNLYPFSSTSNGSGFINENAIQGMNFMNVNTSTITPTTSTSTSLAIESLSCINQDLHLKLQQQRLATMFGGDDEKKDGIRGNDLVSQVSGIEKPQPILFQNLENSKAEMFQGVGDDGDMRKAGPSPSEWFFEMNSYSSVMTPTRTNDSVCMNGDHDNGNYINNNWINNGGVHAWSDVQQQQQLPYSALP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02072 363 MobiDBLite consensus disorder prediction 83 109 - -
Vifa4g02072 363 MobiDBLite consensus disorder prediction 1 33 - -
Vifa4g02072 363 MobiDBLite consensus disorder prediction 92 109 - -
Vifa4g02072 363 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Vifa4g02072 363 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
Vifa4g02072 363 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Vifa4g02072 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 237 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02072 Vifa-Chr4 603871460 603872551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02072 22 358 C2C2-Dof Transcription Factor Family AT5G65590 35.180 2.75e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g02072 zf-Dof 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02072 - - tpra:123923236 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01123 1 184551061 184552202 Vifa4g02072 4 603871460 603872551 PCT