Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01055 ATGGAAGGGATAGGTCCAAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACCAACACAAAATTTTGTTATTACAACAACTATAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGAGGTTCAAGGAAGAACAAGAAAGTTCCTTCATCATCATCATTAGCCACACCTAATAATAATAACTCACCAAAAATTCCTGACCTAAATCCACCAACCCTTCAAGTCTCACATCTTTCATCTCATCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCACCATCATCATAATCCTCATCATCAGAATCATCATGGTATGTCATCATCATATATTGAGATGCATAACAATAATGAATCATCTTCTTCTTCAGCTCTTGACCTACTTAGGTCTAGCATGGCATCTAGAGGCATAAACCCTTATGCTAATAATAATAATATTTCTTTGATGCCAAACTCAAATGCTATTTACCCTTCTGGATTTCCCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATCAATGGAAATAGATCATATGATCATGTTCAAGTCCAAGATGGTGGCGGTGGCAGTGATGGTGGTGGTGGAAGACTTTTGTTCCCTTTTGGAGAAGTTAATAAACAGCTTCCTACAAGTGGTGTTCAAGTGGAACATAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATTGGTGAAGGATCATGGTAA 855 0.3754 MEGIGPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVPSSSSLATPNNNNSPKIPDLNPPTLQVSHLSSHQNPKMHGGQDLNLAFPSMENYHHHHHNPHHQNHHGMSSSYIEMHNNNESSSSSALDLLRSSMASRGINPYANNNNISLMPNSNAIYPSGFPMQEVKPSLGFSIDGINGNRSYDHVQVQDGGGGSDGGGGRLLFPFGEVNKQLPTSGVQVEHNKDQQGNSTGYWNGMIGEGSW 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01055 284 MobiDBLite consensus disorder prediction 65 166 - -
Vifa4g01055 284 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g01055 284 MobiDBLite consensus disorder prediction 260 284 - -
Vifa4g01055 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 164 IPR045174 GO:0003700|GO:0006355
Vifa4g01055 284 MobiDBLite consensus disorder prediction 260 278 - -
Vifa4g01055 284 MobiDBLite consensus disorder prediction 76 118 - -
Vifa4g01055 284 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vifa4g01055 284 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Vifa4g01055 284 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vifa4g01055 284 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01055 Vifa-Chr4 308294094 308294948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01055 16 284 C2C2-Dof Transcription Factor Family AT3G61850 49.141 9.28e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g01055 zf-Dof 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01055 - - gmx:778110 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01055 4 308294094 308294948 Vifa4g01055 4 308294094 308294948 ECH
Vifa5g04036 5 1282973851 1282974387 Vifa4g01055 4 308294094 308294948 PCT