Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00824 ATGGCAACAATGAGTAGGTATTGTTTTCAAACTCTTGTTTTCTTTTTTCTTTCATGCTTCTTCATTTCTTTTTCTCACGCTTTAAACAATGGTTTTAGCGTTGAACTCATCCATCGTGATTCTTCAAATTCACCACTCTATGAACCTACACAAAACAAATACAAATGTGTTGCCAATGCTATTCGTCGTTCCATGAACTATCTTTCCTACAAAAATTCTCTCACTAATATACCCAAATCTACTATTATCCCAGATTTCGGTGAATATATTATGACCTATTCATTAGGCACCCCACCCGTTAAAATATATGGTATTGTTGATACAGGTAGTGACATTGTTTGGCTTCAATGTCAGCCTTGTAGGCAATGTTACAAACAAGTCACTCCTATTTTTGATCCTTCAAAGTCTAAAAGTTATAAAAACCTTCTTTGTTCATCTAAGCAATGTAAATCTGTGGATTTTCATTCTTGCAGTAAAAATAATTCTTGTGAATACTCTGTTGATTATGTTGGTGGAACAGTATCAGAAGGAGATCTTGGTGTGGAGACTCTTACATTGGATTCCACCTCTGGTCATTCTATCTCATTTCCCAATTTCGTGATAGGATGTGGACATAAAAATACAATGTCTTTTCAAGGTAGAAACTCTGGTGTAGTGGGCATTGGAGGTGGACCTATATCTCTTATAACACAATTGGGTTTATCAATTGGTGGAAAGTTCTCTTATTGTTTTGGACCATCAACGTCTAACTCAACTAGCAAACTCAATTTCGGAGATGCTGCAGTGGTTTCTGGTCAAGGGGTTGTCTCAACTACTTTAGTGAAAAAATCTTCACCAATTTTTTACTTTGTAACACTCAATGCATTTAGTGTTGAAAACAAAAGAATAGAATTTTCTAAACCGCCAGTTGAAGGGAACTTCATAATTGATTCAGGTACAACATTGACGATTTTACCATCCGATCTTTATAAAAATGTGGAATCAACTCTAGTTGCGTTGGTTAAGTTGGAGCGCGTGAAGGACCCAAATGGAATTTTGAGCCTTTGTTATTCTGATAAATCAAATAAATATGTGTTTCCTAAAATTATGGCACATTTTAAGGGTGCAGATGTTGGGTTCAACTCTATTAGCACTTTTATTCCAGTTGCTGATGGGGTTGTTTGTTTGGCTTTTGCCCCATCTCAAGACGGCAGTGGCGTCATCGGAAACTTGGCTCAGCAAAATTTATTGGTTGGTTATGACCTTAATCGAAATATTGTTTCTTTTAAGGCAGCTGATTGTACCAAAGTGTAA 1293 0.3619 MATMSRYCFQTLVFFFLSCFFISFSHALNNGFSVELIHRDSSNSPLYEPTQNKYKCVANAIRRSMNYLSYKNSLTNIPKSTIIPDFGEYIMTYSLGTPPVKIYGIVDTGSDIVWLQCQPCRQCYKQVTPIFDPSKSKSYKNLLCSSKQCKSVDFHSCSKNNSCEYSVDYVGGTVSEGDLGVETLTLDSTSGHSISFPNFVIGCGHKNTMSFQGRNSGVVGIGGGPISLITQLGLSIGGKFSYCFGPSTSNSTSKLNFGDAAVVSGQGVVSTTLVKKSSPIFYFVTLNAFSVENKRIEFSKPPVEGNFIIDSGTTLTILPSDLYKNVESTLVALVKLERVKDPNGILSLCYSDKSNKYVFPKIMAHFKGADVGFNSISTFIPVADGVVCLAFAPSQDGSGVIGNLAQQNLLVGYDLNRNIVSFKAADCTKV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00824 430 SUPERFAMILY Acid proteases 84 427 IPR021109 -
Vifa4g00824 430 ProSiteProfiles Peptidase family A1 domain profile. 89 423 IPR033121 -
Vifa4g00824 430 Gene3D Acid Proteases 68 259 IPR021109 -
Vifa4g00824 430 FunFam Probable aspartic protease At2g35615 69 258 - -
Vifa4g00824 430 FunFam Aspartic proteinase CDR1 260 430 - -
Vifa4g00824 430 Pfam Xylanase inhibitor C-terminal 282 423 IPR032799 -
Vifa4g00824 430 CDD pepsin_A_like_plant 88 427 IPR034161 -
Vifa4g00824 430 Pfam Xylanase inhibitor N-terminal 89 259 IPR032861 -
Vifa4g00824 430 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 307 318 IPR001969 GO:0004190|GO:0006508
Vifa4g00824 430 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vifa4g00824 430 PANTHER OS07G0603500 PROTEIN-RELATED 34 428 - -
Vifa4g00824 430 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Vifa4g00824 430 Gene3D Acid Proteases 262 429 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00824 Vifa-Chr4 244982690 244983982 Dispersed/Tandem