Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00820 ATGACATTGAATAATCCACTCTTCGATGATACTCAGAGCAACAGAGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGTTGAATTAATCAATGATCCTGTACAAACTGCTTCTAAACCTACCGGGACTGTTTTAAGCAGTGTCCGTGAGCTTTTGGAGTGTCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCGAATGGCCACACTATATGCTCGGGTTGCAAACCGAGAGTACATAACCGGTGCCCTACTTGTAGGCATGAGCTGGGAAATATTAGATGTCTAGCACTGGAAAAGGTTGCTGCATCTTTTGCACTCCCTTGTAAATACAAAGAGTTTGGGTGCATTGGAATATATCCTTACTACAACAAGCCAGAACATGAATCCCAATGTTCATATAAGCCCTATAACTGTCCATATGCTGGTTCAGAATGCTCCGTTGTCGGTGATATATCCTACCTGGTGAACCATTTGAAAGAAGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTCAAATCAAATCCTCAAGATGTCGAAAATGCCACATGGATGTTAACGGTTTTCAGCTGTTTTGGTCATTTCTTCTGTCTACACTTTGAAGCTTTTCAGCTTGGGATGGCTCATGTCTACATAGCCTTTTTGCGGTTTATGGGTGCTGATAGCGAAGCGAAAAATTATAGCTACAGTCTCGAGGTAGGCGGAAATGGGAGGAAGATGGTTTGGCAGGGAGTGCCAAGAAGCATAAGAGAGAGTCACCGCAAGATTCGCGACAGTTTTGACGGTCTCATTATTCAGAGGAACATAGCTCTCTTTTTTTCGGGTGGTGACCGGAATGAGTTGAAGCTGAGGGTTACTGGCAGGATTTGGAAAGAACAATGA 915 0.4328 MTLNNPLFDDTQSNRDVDPPQNEESTDVVELINDPVQTASKPTGTVLSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASFALPCKYKEFGCIGIYPYYNKPEHESQCSYKPYNCPYAGSECSVVGDISYLVNHLKEDHKVDMHNGSTFNHRYVKSNPQDVENATWMLTVFSCFGHFFCLHFEAFQLGMAHVYIAFLRFMGADSEAKNYSYSLEVGGNGRKMVWQGVPRSIRESHRKIRDSFDGLIIQRNIALFFSGGDRNELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00820 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 108 IPR013083 -
Vifa4g00820 304 MobiDBLite consensus disorder prediction 1 15 - -
Vifa4g00820 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Vifa4g00820 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 303 - -
Vifa4g00820 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Vifa4g00820 304 SUPERFAMILY RING/U-box 45 95 - -
Vifa4g00820 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Vifa4g00820 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Vifa4g00820 304 SUPERFAMILY TRAF domain-like 112 301 - -
Vifa4g00820 304 CDD RING-HC_SIAHs 54 92 - -
Vifa4g00820 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Vifa4g00820 304 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g00820 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Vifa4g00820 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Vifa4g00820 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00820 Vifa-Chr4 244384260 244386039 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00820 4 244384260 244386039 Vifa4g00820 4 244384260 244386039 ECH