Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00819 ATGGAGTCTTTAGTTCTTAAACTCCATGAAATCTCAGCAGTCAAATTTGGAAACTTCAAGCTCAAATCCGGAATCTCCTCGCCAATTTACATAGATCTCCGTCTTGTTATATCTTATCCTTCTGTCCTCCGACAAATTTCTCAAACTATGATTTCTTCTGTCTCGGACTCTAAATTCGACCTTGTCTGCGGTGTCCCTTATACCGCTCTACCTATAGCAACTTGTGTGTCTGTCACTCACGACATCCCCATGGTTATGCGCCGCAAGGAAATCAAAGACTACGGCACTTCTAAAGCCATTGAAGGTGATTTTCAGCATGGCCAAAGTTGCTTGGTAATTGAGGATTTAGTTACTAGTGGCACATCGGTTTTGGAAACTGCTGCGCCGTTGCGTTCCACAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGAAGACAAAATTTGGAGAGCAATGGAATCAAGTTGCATGCGATTCTTAAATTGACTGAAATGGTGAAAATTTTGAGGGAAAAAGGAAGGCTCGATGAGGAGATGGTTAGAGTTGTTATAAGATTCTTAGAGGAAAATCAGAAGGTTGCGACTTTGGGAAATAAAACTAAGTTCAAGAAGGCACTGTCGTATTTGGAGAGAGCTAAGTTGTCCAAGAATCCAATGGGAAAGAGGTTATTTGAGATAATGGCCGAGAAGGAAAGTAATCTATGTTTGGCTGCGGATGTTGGAACTACAGCTGAATTGCTTGAAATTGCCGACAAGGTTGGGCGTGAGATATGCTTGCTGAAAACGCATGTAGATATTTTACCAGATTTTACTCCGGATTTTGGCTCAAAGCTTCGTGCGATTGCAGAAAAACACAACTTCTTAATATTTGAGGATCGTAAGTTTGCCGACATTGGTAACACTGTGACCATGCAGTACGAAGGAGGGATCTTTCATATATTGGAATGGGCTGATATAGTAAATGCTCACATTATCTCTGGTCCCGGAATTGTCGATGGACTGAAACTAAAGGGTTTGCCTCGCGGAAAGGGTTTGTTGCTACTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACATCTGCTGCAGTGAAAATTGCCGAGGATCATTCCGACTTTGTTATTGGCTTCATCTCAGTCAATCCAGCATTGTGGTCTGGTGCACTGATAAATCCTTGTTTCATTCACGCAACTCCTGGAGTTCAAATGGCGATTGGTGGTGATGATCTAGGGCAGCAATATAATACTCCATATTCCGTGATCCATGATAGAGGTAGTGACATTATTATCGTCGGGCGTGGCATCATCAAGGCAGCGAATCCAGCTGCAGCAGCTCGCGAATACCGTCTTCAAGGGTGGAGTGCATACTTGGACAAGTGTAAGTAA 1410 0.4312 MESLVLKLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSVLRQISQTMISSVSDSKFDLVCGVPYTALPIATCVSVTHDIPMVMRRKEIKDYGTSKAIEGDFQHGQSCLVIEDLVTSGTSVLETAAPLRSTGLKVSDAVVLIDREQGGRQNLESNGIKLHAILKLTEMVKILREKGRLDEEMVRVVIRFLEENQKVATLGNKTKFKKALSYLERAKLSKNPMGKRLFEIMAEKESNLCLAADVGTTAELLEIADKVGREICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILEWADIVNAHIISGPGIVDGLKLKGLPRGKGLLLLAEMSSAGNLAKGDYTSAAVKIAEDHSDFVIGFISVNPALWSGALINPCFIHATPGVQMAIGGDDLGQQYNTPYSVIHDRGSDIIIVGRGIIKAANPAAAAREYRLQGWSAYLDKCK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00819 469 SUPERFAMILY Ribulose-phoshate binding barrel 211 466 IPR011060 -
Vifa4g00819 469 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 237 456 IPR001754 GO:0004590|GO:0006207
Vifa4g00819 469 Gene3D Aldolase class I 208 469 IPR013785 -
Vifa4g00819 469 Gene3D - 1 206 IPR029057 -
Vifa4g00819 469 CDD OMP_decarboxylase_like 239 445 - -
Vifa4g00819 469 SMART OMPdecase_2 238 456 IPR001754 GO:0004590|GO:0006207
Vifa4g00819 469 FunFam Uridine monophosphate synthetase 1 201 - -
Vifa4g00819 469 NCBIfam orotidine-5'-phosphate decarboxylase 239 457 IPR014732 GO:0004590|GO:0044205
Vifa4g00819 469 CDD PRTases_typeI 58 166 IPR000836 -
Vifa4g00819 469 SUPERFAMILY PRTase-like 3 190 IPR029057 -
Vifa4g00819 469 FunFam Uridine monophosphate synthetase 208 469 - -
Vifa4g00819 469 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 468 - -
Vifa4g00819 469 Pfam Phosphoribosyl transferase domain 51 150 IPR000836 -
Vifa4g00819 469 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 225 IPR023031 GO:0004588|GO:0006221
Vifa4g00819 469 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 294 307 IPR018089 GO:0004590|GO:0006207
Vifa4g00819 469 NCBIfam orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00819 Vifa-Chr4 243767261 243769314 Dispersed