Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00791 ATGGGAAGTAGAATCAGGGTTAGTTTTGAAGATGAGAAGGGAGCAGAAACAGGGATGCCGAGCTTCAATTCCGACGATGCATGCTATACAGAAGGGAACACAGTTGATGCTTTTCATGTTTCTGACTTTGGAGCATTTGGTCAGCCGTATCGCATAGAGGATGCCGTTGCTCTGAGTGGAAATTCAAACTCGATTTTTAACTCACTAAAAGTAAGTGGCCAAACAATTTCTCCCGGCCCGGCTCACATAAGTACTCTTGGAAAATTTCCAACATCACTTGATAAAAGCCCCTTGGAGAATCAAACAGAGCCACATAGGTTGCAATTAACAAAGCTTCAATCATCAAATCTTAGCAGCAGTTCGATATTAAGTGTTCATATAGAAAACCAGGAAGAGTTTACCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACCGATGACAAGAATCAACGGTTTGATACAAATCAATCTCTTGTTCCTGTGGGTTCCGACTCCAGTGACAGATCAAAGGATAAATCAGATCAAAAGACTCTCCGCAGGCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCCGGTTGAGAAAAAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACTCAACTAGAGCAAGAGCTTCAGCGAGCCAGACAACAGGGAGTCTTCATATCAAGCTCGGGTGAACAAACACATTCGCTGAGTGGAAATGGGGCAATGCAATTCGATGCAGAATATGCAAGGTGGCTAGAAGAGCAGAATCGGCAAATTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTAAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCGGGCATGTGGAAAACACCTGCTGAGAGGTGTTTTTTATGGCTTGGCGGTTTTCGTTCGTCTGAGCTTCTCAAGCTTCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAGTTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGACGCATTGTCTCAAGGCATGGAAGCATTACAACAGTCCCTTGCAGAGACGTTGTCCACCGGCGCACCTTCCTCCTCTGGTTCCTCAGGGAACGTCGCAAACTACATGGGTCAAATGGCTATGGCCATGGGTAAACTCGGGACACTCGAGGGCTTCATTCGACAGGCTGACAATCTGCGCCAGCAGACTCTACAACAAATGCACCGAATATTGACAACACGACAATCGGCTCGTGCACTTCTTGCCATACATGATTACTTTTCGCGGCTGCGCGCTCTCAGCTCCCTCTGGCTGGCCCGTCCACGAGATTAA 1401 0.4575 MGSRIRVSFEDEKGAETGMPSFNSDDACYTEGNTVDAFHVSDFGAFGQPYRIEDAVALSGNSNSIFNSLKVSGQTISPGPAHISTLGKFPTSLDKSPLENQTEPHRLQLTKLQSSNLSSSSILSVHIENQEEFTMADASPRTDISTDVDTDDKNQRFDTNQSLVPVGSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQTHSLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00791 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Vifa4g00791 466 MobiDBLite consensus disorder prediction 133 183 - -
Vifa4g00791 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Vifa4g00791 466 FunFam BZIP family transcription factor 180 229 - -
Vifa4g00791 466 Pfam Basic region leucine zipper 177 223 IPR004827 GO:0003700|GO:0006355
Vifa4g00791 466 PANTHER TRANSCRIPTION FACTOR TGA9 129 465 - -
Vifa4g00791 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Vifa4g00791 466 Gene3D - 180 229 - -
Vifa4g00791 466 CDD bZIP_HBP1b-like 181 233 - -
Vifa4g00791 466 Coils Coil 200 227 - -
Vifa4g00791 466 Coils Coil 257 277 - -
Vifa4g00791 466 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g00791 466 Pfam Seed dormancy control 263 339 IPR025422 GO:0006351|GO:0043565
Vifa4g00791 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Vifa4g00791 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00791 Vifa-Chr4 233197257 233201686 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa4g00791 DOG1 5.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00791 4 233197257 233201686 Vifa4g00791 4 233197257 233201686 ECH