Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00789 ATGGCATCTTCATTAGGAGGCAATAGCGTAGAGTGGCACGTTCGTCCTCCAAACCCTAAAAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATACCTGCCGGTAGAATCAAAATGGAACTCTTCGCTGATATTGTCCCCAAAACCGCGGAGAATTTCAGGCAGTTCTGCACGGGGGAGTACAGGAAAGCAGGGCTTCCTATTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATCCAGGCTGGTGATTATGTAAAGGGTGATGGTAGTGGATGTGCTTCCATTTATGGACTCAAGTTTGATGACGAGAATTTCATCGCCAAACACACTGGACCTGGCCTTCTATCAATGGCAAATAGCGGACCAAATACCAATGGTTGCCAGTTCTTTTTAACTTGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTGAGGAAGATTGAGAATGTTGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGTGTCATTGCTGAATGTGGTGAAATGTAA 570 0.4421 MASSLGGNSVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIVPKTAENFRQFCTGEYRKAGLPIGYKGCQFHRVIKDFMIQAGDYVKGDGSGCASIYGLKFDDENFIAKHTGPGLLSMANSGPNTNGCQFFLTCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00789 189 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 71 88 IPR020892 GO:0003755|GO:0006457
Vifa4g00789 189 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 187 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 SUPERFAMILY Cyclophilin-like 12 189 IPR029000 -
Vifa4g00789 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 88 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 162 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 CDD cyclophilin_ABH_like 22 187 - -
Vifa4g00789 189 FunFam Peptidyl-prolyl cis-trans isomerase 11 189 - -
Vifa4g00789 189 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 189 - -
Vifa4g00789 189 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 25 188 IPR002130 GO:0000413|GO:0003755
Vifa4g00789 189 PIRSF Peptidylpro_ismrse 10 189 IPR024936 GO:0003755
Vifa4g00789 189 Gene3D - 11 189 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00789 Vifa-Chr4 233154198 233158993 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00789 4 233154198 233158993 Vifa4g00789 4 233154198 233158993 ECH