Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00782 ATGAGTAATCCAGCTGATACGGATATGGAAGATACTAAACCCTCTGTTGTAGTGGTTGATAATGGTGACCAAGCTCAGTTTCGGTTTGCTGAGTTTTCTAAGAATGAGCTAGCATTGGATGAGAAAAGCTGTAAGGAAGCAACGGATCTGTTTGGAGAAACCAAACATCTTCTCATGGCAAATGTTTCGTCAATGGGAAATGGAACGATTGAAGAAGCAGAACGGTACTGGTTTGCTTTTATTTTATACTGTATCAAGAAACTTACTCAGAAAAATGAGGAGAGTGGGAAGGAAGAGATTGAGAATACCGGTCTTACCCTGTGTCGAATATTGAGAGCAGCAAAGCTTAATATTGCGGAATTTTTCAAAGAACTTCCTCAATTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATCTATATGGCCCGGATTGGGAAACCAAGCTTGAGGCCAAGGAGATGCATGCCAATACTATTCACTTGAAGATTCTTAGCAAGTATTATAAGCGTGTATTTGAAGAGTTCTTTGTGTCAACTGTTGCAAACATTGAAAGTAACTCATCTGTTACCATCCGTGTATCTGATTATCATCGCTTTGGATGGTTGCTTTTCTTGGCTCTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACGAATGGTTTAATTTCTATCTTGGCAATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAATTTCAACATTCATGACTCTTCACGATTTGTTAAGAAAAGTGACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACTTATACAACACTTCAGAAGATGAATTGAAGAAAACCATTGAGCAAGCCAATAATTTAGTAGCAGATATATTGAAAAAGAAACCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAGTTTCGACAGAGATGGTTTAACCTATTTTAAAGATCTGATGGAGGAATCATCTCTGCTGTCTAATTTGAGTGTGTTAGAAAATGATTACGATCACATGACTCGCAACAACGGTGAACTGGATGAAAGGTTATTCATCAATGAGGATGACAGTCTACTAGCTTCAGGAAGTCTTTCCGGAGGTTCTGTTTCAGCCGGAGTTGTAAAGAGGAAATTTGATTTGATGACATCACCTACTAAAGCGATTGCAAGTCCACTTTCACCGCGCCGTTCTCCTGCATCCCATGCTAATGGCATTCCAAGTAGTGCAAATGCAGTGATTGCTGCCACCCCTGTTAGCACAGCAATGACTACGGCAAAGTGGCTTCGCACTGTCATTTCCCCACTTCCATCAAAGCCCTCACAAGAGCTGGAGCGATTCTTGACATCATGTGACAAGGATATTACAAGTGATGTAATACGCAGAGCGCAGATTATCTTGCAAGCAATATTTCCTAGTAGTCCCCTTGGTGACCGATGTGTAACTGGAAGCCTTCAAAGTGCTAATCTAATGGACAACATATGGGCGGAACAACGAAGATTAGAAGCACTGAAGTTATATTATAGGGTATTGGCAACAATGTGCAGAGCAGAAGCTCAAATACTCGGCAACAATCTAACATTGCTGCTTACTAATGAGAGGTTCCATAGGTGTATGCTTGCTTGTTCTGCAGAACTAGTCCTGGCTACTCACAAGACTGTAACGATGTTGTTCCCTGCTGTACTAGAGAGAACTGGAATCACAGCTTTTGATCTTAGCAAAGTGATAGAGAGTTTCATTAGATATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAACTCACTGGAGGAGCGGCTTTTGGAGAGCTTGGTATGGGAAAAGGGTTCTTCAATGTATAATTCATTGGCAGTCGCTAGACCCGCCCTTTCTGTAGACATCAATCGGCTTGGTCTGATGGCAGAACCCATGCGATCGTTAGATGAAATCGCAATGGATATTAACTTCTCTTGTGGAGGACTCCCTCCTGTGCCTTCCTTGCCGAAGCCTGAGACGATGTCAGCACAAAATGGGGACCCCAGATCACCAAAACGGCTCTGTACTGAACATCGAAATGTGTTGGGGGAACGAAATTCTTTTACTTCACCGGTGAAAGACCGACTTCTTCACTTAAGCAACCTAAAGTCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCAAGTCCGACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGCGCTGAAACTGGTATCAGTGTCTTTTTCAGCAAGATTGTCAAGTTGGGAGCAGTCAGAATAAGCGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAACCAATGGACATCGCTCTTCTTCAACCGCCATATCGACCAAATCATTCTGTGTTGCTTCTATGGAGTTGCAAAGATATCACAACTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCCCAATGCAAACCACAAGTTTTTCGAAGCGTATTCGTCGACTGGTCATCTGCGCGCCGTAATGGATCATGCAAGCAAAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAATGAAGTTTTCATTCCCTCTGTAAAGCCATTGCTAGTTGAAATTGGCCCTGGCGGAACAACTACGAAAAGTGACCGAATACCTGAAGCTAACAACAAAAATGATGGTCATTTGGCTCAATGTCCAGGATCTCCTCGAATATCACCTTTCCCAAGCCTTCCTGATATGTCACCTAAAAAAGTTTCTGCAACACACAATGTGTATGTCTCTCCATTAAGATCATCCAAGATGGATGCTCTAATTTCACATAGCTCGAAAAGCTATTATGCATGCGTTGGGGAGAGCACACATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATAAACAATCGATTAAACGGCACCCGGAAAGTAGTAAGAGGATCCCTCAATTTTGATGACGTTGATGTTGGCCTAGTTAGCGACTCTATGGTAGCAAACAGCCTCTATATACAAAACGGAAGTTCTGCGTCATCATCAGGTGCACCATTGAAGACTGAGCAACCTGACTCTTAA 3084 0.4235 MSNPADTDMEDTKPSVVVVDNGDQAQFRFAEFSKNELALDEKSCKEATDLFGETKHLLMANVSSMGNGTIEEAERYWFAFILYCIKKLTQKNEESGKEEIENTGLTLCRILRAAKLNIAEFFKELPQFVVKAGPILSNLYGPDWETKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTVANIESNSSVTIRVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSDKGVDLLASLCNLYNTSEDELKKTIEQANNLVADILKKKPCLASECETENLESFDRDGLTYFKDLMEESSLLSNLSVLENDYDHMTRNNGELDERLFINEDDSLLASGSLSGGSVSAGVVKRKFDLMTSPTKAIASPLSPRRSPASHANGIPSSANAVIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDKDITSDVIRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLATMCRAEAQILGNNLTLLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSVDINRLGLMAEPMRSLDEIAMDINFSCGGLPPVPSLPKPETMSAQNGDPRSPKRLCTEHRNVLGERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGSCKQRTGQEHIDIISFYNEVFIPSVKPLLVEIGPGGTTTKSDRIPEANNKNDGHLAQCPGSPRISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVVRGSLNFDDVDVGLVSDSMVANSLYIQNGSSASSSGAPLKTEQPDS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00782 1027 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 1025 IPR028309 GO:0006357|GO:0051726
Vifa4g00782 1027 SMART DUF3452_2 88 234 IPR024599 -
Vifa4g00782 1027 Gene3D - 700 895 - -
Vifa4g00782 1027 Coils Coil 268 292 - -
Vifa4g00782 1027 Pfam Retinoblastoma-associated protein A domain 416 616 IPR002720 GO:0005634|GO:0051726
Vifa4g00782 1027 FunFam Retinoblastoma-related protein 1 690 907 - -
Vifa4g00782 1027 SUPERFAMILY Cyclin-like 738 914 IPR036915 -
Vifa4g00782 1027 FunFam Retinoblastoma-related protein 1 419 606 - -
Vifa4g00782 1027 MobiDBLite consensus disorder prediction 658 679 - -
Vifa4g00782 1027 Gene3D - 195 353 - -
Vifa4g00782 1027 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Vifa4g00782 1027 Pfam Retinoblastoma-associated protein B domain 740 871 IPR002719 GO:0005634|GO:0051726
Vifa4g00782 1027 SUPERFAMILY Cyclin-like 424 618 IPR036915 -
Vifa4g00782 1027 Coils Coil 329 349 - -
Vifa4g00782 1027 FunFam Retinoblastoma-related protein 1 195 353 - -
Vifa4g00782 1027 Gene3D - 419 606 - -
Vifa4g00782 1027 SMART RB_A_2 416 616 IPR002720 GO:0005634|GO:0051726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vifa4g00782 RB_A 8.3e-62 CL0065