Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00533 ATGGCCATTGAAAAATCAAATTCCTATGAGAATTTAAAACATTACATTGCTATGATATGCTTACAATTTGGTTATGCTGGTATGAATATCATCACTAAGGTTTCACTTAACCAAGGCATGAGTCACTATGTTCTTGTGGTTTATCGCCACGCTTTCGCAACCGCTTCTATTGCTCCATTTGCACTTATGTTTGAAAGGAAAGGTCAACCAAAGATAACATTCAGAATTTTCATCCAAATTTTCATCCTAGCTCTTCTTGGGCCAGTGATTGATCAAAATTTCTATTATGCTGGATTGAAACTCACATCTCCAACTTTCTCTTGTGCAATGAGCAACGTGCTTCCAGCCATGACTTTTGTCATGGCAGTTTTATGCAGGATGGAGAAGATAAACATAAAGCAAGTGAGATGCCAAGCAAAGATATTTGGAACAATAATGACAGTGGCAGGTGCAATGCTAATGACATTATACAAAGGACCAATAGTGGAGATGATATGGGCCAAACATAGACATTCTCAAAATGAAACACATGAAACAACCACCACAGGTTCTTCTGAAAGAGATTGGATTTTAGGTTGCACTTTCCTTATCATTGCCACTTTTGCTTGGGCTTGTCTCTTTGTTTTGCAAGCAAAAGTTATTGAAACGTACAAGCATCATCAATTAAGTCTCACTTCACTTATGTGTTTCATTGGTACTCTTCAAGCTATTGCTGTTACTTTTGTGGCTGAGCATAATCTTTCTGTTTGGAGGATTGGTTGGGATATGAGTTTGCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGCTTAGCATACTTTGTGCAAGGGCTAGTGATTAGGAAGAAAGGGCCTGTATTTGCAACTGCCTTTAGCCCACTTATGATGATCATTGTTGCAATCATGGGTTCCTTTATCCTTGCAGAACAAATATACTTTGGAGGTGTGATAGGGGCCATCTTGATTGTTATAGGTTTATACTCAGTTCTGTGGGGAAAGCATAAGGAAGAAACAGAAAGAAAAATAGAAAATGATATTCCTTTGCCTATAAAAGGTGTTCAAATTGGTGCAAATTCTGGGCCAGTGATTGATGACAATGATCAAGTGAAAAATGGTCAAGTTGGAGATACTAACAACATGCTTTCTTCACTTGCAATAACCATGCCTACTAAAGTGCCTACTACTAATAATGTTAACCAACAATAA 1206 0.3789 MAIEKSNSYENLKHYIAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATASIAPFALMFERKGQPKITFRIFIQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVLCRMEKINIKQVRCQAKIFGTIMTVAGAMLMTLYKGPIVEMIWAKHRHSQNETHETTTTGSSERDWILGCTFLIIATFAWACLFVLQAKVIETYKHHQLSLTSLMCFIGTLQAIAVTFVAEHNLSVWRIGWDMSLLAAAYAGIVTSSLAYFVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAEQIYFGGVIGAILIVIGLYSVLWGKHKEETERKIENDIPLPIKGVQIGANSGPVIDDNDQVKNGQVGDTNNMLSSLAITMPTKVPTTNNVNQQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00533 401 Pfam EamA-like transporter family 15 155 IPR000620 GO:0016020
Vifa4g00533 401 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020
Vifa4g00533 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 335 - -
Vifa4g00533 401 PANTHER WAT1-RELATED PROTEIN 15 340 IPR030184 GO:0016020|GO:0022857
Vifa4g00533 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00533 Vifa-Chr4 147295799 147298009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00533 1 389 Nodulin-like Gene Family AT5G07050 63.659 2.55e-179 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00533 4 147295799 147298009 Vifa4g00533 4 147295799 147298009 ECH
Vifa2g00223 2 27548636 27551575 Vifa4g00533 4 147295799 147298009 PCT