Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00530 ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAAATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTCTCTAAAGCTCTAGAGCTGTTTCTGCAAGATCTTTGTGACCGCACATATGAAATAACTCTTCAGAGAGGGGCAAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCACGGCCATACTGATGCTGGTGGCGCTGATGATCAGGCCATTCCAAAAAGAAGGAAAGCAGCAGGTGATGATTGTAATGACAGCGATGAAGAAGCTAAGAGGGGCAAGATGGTTGAGTTGGGCCACCCTAGCCCTACTGGCAGGGGAAGAGGCCGAGGTAGAGGAAGAGGACGTGGTCGAGGTCGAGGACGGGCTAGTCAAAGAGAGGGACATCATCAGGAGACTGAGTTTGATGCCTTTCCTTCTATTCAGCAAGTTAGCCAGCCGATTACAGATACGACTGTGATTATACATGATATCTCAGAGCCAAGGGAGTTACCAAAGGAGAATATTGTTGCTCCTGTTGAAAACTCCGACTCACTCCGAAATATTGATCTGAATGCCAATATGATCGAAAGTGATGACAAAAAGACCAGCACAGTTGCAAATCTTGTAGTCTCTATTCCAGGAGCCACTAGTCCTACAGCCACTATTCCTGCAGCCGTTATTCCTGAAGCCTCTAACTCTGATGCTGCTAAATCTGATGCTGCTAATCCTGCAGCCGCGATTCCTGAAGCCAGTGTTCCCTCATTGCCTGAACCTGCTCCAACTGACAACATGCATCATGAAGAAATTCCAGGCTGGTCTCTTTCTGAGGTGGACAAGATGGCCATTGATACAATGCAGCTTGCACAGCGAATGGAAGAGGATGATGAAGATTACGACGAGGAGGATGAGTGA 999 0.4645 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGGADDQAIPKRRKAAGDDCNDSDEEAKRGKMVELGHPSPTGRGRGRGRGRGRGRGRGRASQREGHHQETEFDAFPSIQQVSQPITDTTVIIHDISEPRELPKENIVAPVENSDSLRNIDLNANMIESDDKKTSTVANLVVSIPGATSPTATIPAAVIPEASNSDAAKSDAANPAAAIPEASVPSLPEPAPTDNMHHEEIPGWSLSEVDKMAIDTMQLAQRMEEDDEDYDEEDE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00530 332 FunFam dr1-associated corepressor homolog 1 86 - -
Vifa4g00530 332 SUPERFAMILY Histone-fold 3 90 IPR009072 GO:0046982
Vifa4g00530 332 MobiDBLite consensus disorder prediction 94 131 - -
Vifa4g00530 332 MobiDBLite consensus disorder prediction 94 168 - -
Vifa4g00530 332 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 119 - -
Vifa4g00530 332 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vifa4g00530 332 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vifa4g00530 332 MobiDBLite consensus disorder prediction 262 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00530 Vifa-Chr4 145856521 145859117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00530 1 230 CCAAT-HAP5 Transcription Factor Family AT3G12480 54.508 4.25e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa4g00530 CBFD_NFYB_HMF 2.7e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00530 4 145856521 145859117 Vifa4g00530 4 145856521 145859117 ECH