Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00517 ATGATGGGACAGATGAAAAAGGAGATTCCGGATGACATGCTCCATGATGATCAGATTGGTTCCCAGTTGAATGACGAGGGTAATGACAGAAGTGCCTGTGGAGTTGCTCTGAAGAAAGGGCCATGGACAACTGCTGAAGATGATATATTGGTCAATTATGTCAAGAAGAACGGAGAGGGGAACTGGAATGCCGTTCAGAAGCAGACAGGCCTGCTGCGTTGCGGAAAAAGTTGTCGATTGCGATGGGCTAATCACCTAAGGCCCCATTTAAAGAAAGGGGCATTTACTGAGGAAGAGGAGCGCTTGATTTGTGAGCTTCATGCAAAAATGGGAAACAGATGGGCACGCATGGCAGTGCATTTACCTGGTCGTACCGACAATGAGATAAAAAACTATTGGAACACTCGGATCAAGAGGCGTCACCGAGCTGGCCTGCCACTTTATCCTCCTGGTATACATCAAGCGACTCTTAATAACCAAAGCACTGGTAGAATTAATGGTGGCAATAAAGTGCATTCTGATTTCTTGCATAAAAGGAGTTTTAGTATGCATGATGCAATGTTTGATATTCTGAAGGATACCCAGGGAATCTTACCTTATTCGCCTGATATTTCTGGTTATGGCAATATGGAAAATGGTCTTGATTCTTCTCAGTACTGTAGTTTTGTGCCATCAACATCATCTAACCCCAAACGTTTTCGAGAGTCCCCAATGCCGTTTCTTGATTTCGGTTGTATTGACAGAAACGGTATTTATCCATATGAACATACTCAGGATGATGCTTTTGATAAGTTGACACAATCATTTGGGGTGCAATCCCCTCTTGATCCTGGTTTCTTCTCAAACAGCTTACCGTGTTATAGCCATTCACTTAAAAATGGCAACTTCTCTACTTCTAAGCCTTTTGAGGTTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCGGAAATTGATTTAGGTAGCTGGGGTACATCTCCCCCACATCCTTTACTTGACTCAATTGATGATTTTATCAAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGCAATCTGTACTTCATCAGCGGAAGACTCCGAGCAGTTCAAAAAACCAATATTATGACAGAAGTTCAAATTCATTTGCTGCAACTCCCCGTGAAAGAGATGACCTCTCAGCTTGGTGCATGTATGAGCCAGAATGGGAAGACTATGCTGACCCTGTATCTCCATCTGGTGTATCTTCAATATTGAATGAGTGCCCTGCTGTTGGTGCCAACATAAATTCACTGGATGAACAGCCACCTGTTCAGACCGATAATGGCAACATTATGAAATCAGAGTATGTTGACCGTGCATGGTCCCCTGACAGTGCTTATATCAAGTCTCTGTTGAACAATAGTCGGCCAGATTTTGTGCTTGATTCAGATTGGTATGAGCCGTGTTCTCGGCGTGACAATAACCAATCCATTGCCACTGACTATAAACATATGACTGCTGCTGGAACTTCTAACCCGAGTCAGGTATGGGAGTTAAGTTCTTATGGATGGAACAACATGCCTGCTGTCTGTCAAGTATCTGATCTTGGTTAA 1602 0.4345 MMGQMKKEIPDDMLHDDQIGSQLNDEGNDRSACGVALKKGPWTTAEDDILVNYVKKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPHLKKGAFTEEEERLICELHAKMGNRWARMAVHLPGRTDNEIKNYWNTRIKRRHRAGLPLYPPGIHQATLNNQSTGRINGGNKVHSDFLHKRSFSMHDAMFDILKDTQGILPYSPDISGYGNMENGLDSSQYCSFVPSTSSNPKRFRESPMPFLDFGCIDRNGIYPYEHTQDDAFDKLTQSFGVQSPLDPGFFSNSLPCYSHSLKNGNFSTSKPFEVVKSELPSLQYPEIDLGSWGTSPPHPLLDSIDDFIKSPTPISTLESDCSSPQNSGLLQSVLHQRKTPSSSKNQYYDRSSNSFAATPRERDDLSAWCMYEPEWEDYADPVSPSGVSSILNECPAVGANINSLDEQPPVQTDNGNIMKSEYVDRAWSPDSAYIKSLLNNSRPDFVLDSDWYEPCSRRDNNQSIATDYKHMTAAGTSNPSQVWELSSYGWNNMPAVCQVSDLG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00517 533 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Vifa4g00517 533 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Vifa4g00517 533 MobiDBLite consensus disorder prediction 1 27 - -
Vifa4g00517 533 FunFam MYB-related transcription factor 38 91 - -
Vifa4g00517 533 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Vifa4g00517 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Vifa4g00517 533 MobiDBLite consensus disorder prediction 8 23 - -
Vifa4g00517 533 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Vifa4g00517 533 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Vifa4g00517 533 Gene3D - 94 140 - -
Vifa4g00517 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Vifa4g00517 533 Gene3D - 38 91 - -
Vifa4g00517 533 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 501 - -
Vifa4g00517 533 FunFam Transcription factor GAMYB 94 140 - -
Vifa4g00517 533 CDD SANT 41 86 IPR001005 -
Vifa4g00517 533 SMART sant 38 88 IPR001005 -
Vifa4g00517 533 SMART sant 91 139 IPR001005 -
Vifa4g00517 533 MobiDBLite consensus disorder prediction 365 388 - -
Vifa4g00517 533 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00517 Vifa-Chr4 143184355 143187250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00517 36 526 MYB Transcription Factor Family AT3G11440 40.561 1.45e-100 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g00517 Myb_DNA-binding 6.1e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00176 2 23579152 23582361 Vifa4g00517 4 143184355 143187250 PCT