Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00509 ATGTCTTCTTTTAAAGCCTATGGTAAAGTCGACGAAATCGACCAAGCCATGTTCGAAGTTCGAAGAAGATCTCGAAAGAGAATAATCATCATAAGCTTGTCAACAATTGTCCTCGTCGGTATTGTTTTTGCAGCGGTTTTCGGAACCATTGCTCATAATAATGCTCGTAACAATGACAACAACAACGACAACAATGATCAATCTGTTTCGAGTTCCGTGAAGGCTATTTGTGATGTTACATTGTACAAGGATTCATGTGAAAGAAGTCTGAGTCCTCTTGTTCATTCGGGTCAGCAACTTGGACCTGAAGAGTTGTTCAAATTGTCGATTCAAGTGGCATTAACCGCGGTTTCGGAAGGCGTTGAGTATTTCTCTGAGCATGGAGCTTTTGATAAGATGAACTTGAATTTGGATAATAGAACAAAGGAAGCTTTGGTGAATTGTAAGGATCTTTTGGACCTTGCTGTTGATCATTTGAATAGCTCTTTGGCTTATGATGGAAAGTCTTATTTGGTTCATGTTTTGGAGGATCTTGAAACATGGTTGAGTGCTTCAGGTACTTACCAACAAACATGCATTGATGGTTTAGGAGAGGCAGAAGAAGCATTAAAGTCAAGTATTGCAACCAATCTCAAAGACTCCACAGAACTCACAAGCAACAGTCTTGCCATCATCGCATGGCTTAACAAGGCTGCATCGTCGGTAAACTTTCGACGACGACGCTTACTGAGTTTATCTCATCAGAATGATCAACCAAACTGGCTTCATCCTAAACACAAAAAGCTACTTCAAACAGACGATGATTTGAAGAAGAAAGCCGACATTGTTGTCGCGAGAGACGGGACTGGAAAATACAAAACTATTTCAGATGCATTAAAACATGTAAGTGATAAAAGTGACAAGAGGACTGTGATCTATGTGAAGAAAGGGACTTATTATGAAAATGTAAGAGTGGAGAAAAATAAATGGAATGTCATGATTATTGGTGAGGGTATGAATGTTACAACTGTTTCTGGTAGCCTTAATTTTGTGGATGGCACACCAACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATTGGTTTCAGAAACACAGCTGGTCCAGAAAAACACCAAGCAGTAGCGCTAATGACGAGCGCGGATCAAGCAGTTTTCTACAAATGTTCCATTGATGCATACCAAGACTCACTCTACGTTCACTCGAACCGTCAATTCTACCGAGAATGCAACATCTACGGAACAGTCGATTTCATATTCGGAAACTCCGCCACTGTACTCCAAAACTGCAACATTTTACCAAAACAACCAATGCAAGGACAGCAGAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGACTTTCGATTCAAAATTGCAATATTTCGCCTTTCGGAGACTTGAGTTCTGTTAAAACATATTTAGGCAGGCCTTGGAAGAATTACTCAACAACAGTGTTTATGCAATCAAACTTGGGGAGTTTTATTAGTCCAAATGGATGGTTACCTTGGATCGGAGATTCCGCACCCGATACTATATTCTATGCTGAATTTCAGAATATTGGAGCTGGTGCTTCAACAAAGAATAGGGTCAAATGGAAAGGTTTGAAAAGTATTACAAATAAACAAGCTAAAAAGTTTACTGTTAAGTCTTTTCTTAATGGAGATAAATGGATTCCTGCTTCTGGTGCAACATTTAAATCTTCTTTGTAA 1743 0.393 MSSFKAYGKVDEIDQAMFEVRRRSRKRIIIISLSTIVLVGIVFAAVFGTIAHNNARNNDNNNDNNDQSVSSSVKAICDVTLYKDSCERSLSPLVHSGQQLGPEELFKLSIQVALTAVSEGVEYFSEHGAFDKMNLNLDNRTKEALVNCKDLLDLAVDHLNSSLAYDGKSYLVHVLEDLETWLSASGTYQQTCIDGLGEAEEALKSSIATNLKDSTELTSNSLAIIAWLNKAASSVNFRRRRLLSLSHQNDQPNWLHPKHKKLLQTDDDLKKKADIVVARDGTGKYKTISDALKHVSDKSDKRTVIYVKKGTYYENVRVEKNKWNVMIIGEGMNVTTVSGSLNFVDGTPTFSSATFAVFGKNFIARDIGFRNTAGPEKHQAVALMTSADQAVFYKCSIDAYQDSLYVHSNRQFYRECNIYGTVDFIFGNSATVLQNCNILPKQPMQGQQNTITAQGKTDPNMNTGLSIQNCNISPFGDLSSVKTYLGRPWKNYSTTVFMQSNLGSFISPNGWLPWIGDSAPDTIFYAEFQNIGAGASTKNRVKWKGLKSITNKQAKKFTVKSFLNGDKWIPASGATFKSSL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00509 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 228 IPR035513 -
Vifa4g00509 580 CDD PMEI-like_3 75 230 - -
Vifa4g00509 580 FunFam Pectinesterase 268 580 - -
Vifa4g00509 580 FunFam Pectinesterase 69 229 - -
Vifa4g00509 580 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Vifa4g00509 580 Gene3D - 269 580 IPR012334 -
Vifa4g00509 580 PANTHER PECTINESTERASE 35 570 - -
Vifa4g00509 580 SMART PMEI_2 68 224 IPR006501 GO:0004857
Vifa4g00509 580 Pfam Plant invertase/pectin methylesterase inhibitor 72 224 IPR006501 GO:0004857
Vifa4g00509 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 230 IPR035513 -
Vifa4g00509 580 Pfam Pectinesterase 274 566 IPR000070 GO:0030599|GO:0042545
Vifa4g00509 580 NCBIfam pectinesterase inhibitor domain 66 228 IPR006501 GO:0004857
Vifa4g00509 580 SUPERFAMILY Pectin lyase-like 272 576 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00509 Vifa-Chr4 140825291 140827351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00509 1 580 Carbohydrate Esterase AT3G10710 55.326 0.0 663
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00164 2 19455102 19458849 Vifa4g00509 4 140825291 140827351 PCT