Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00481 ATGACCGGAAACTCCTTACCGGCGGTGAAGCTCACCGACAGTGGCCGCCCAGTTCTGTTACCGAACGAGATCGAGTGCTTTTTCCTCTCCGGCGTAGACCTTCTCAGCGAAGACGAACCTAACACATGGTTCCCTCACTTAAAATCCGGCCTCCTCATCCTAACCACCCACCGTCTCCTCTGGCTCCCAGAAGCGGCCGTCGCCGCCTCATCGTCCTCCGTGGCCGTCCCCCTTGCTTCAATCTCCCACATTTTTCCACACAAGAAGTCTCTCAAATCGGTGTTTGCCTCCCCTAGGGTCCGTTTCCAGGTGTCGCCATCGCCGGAGCGAGGAGTTGCTTCATCGGGATCGAGATCGGTGGTTGCGACAGTCGTGGCGAGGGGAAAAGGGGATTGTGATGCTTTTGTGTCTAAGTTTTGGGAGAATTGGAGAGGTAGAGCGTGGGAGGAGTCAGAGAGTGCTACGAGTTCGAGCTCTAACGCGGCGGCTAGGGCAGCATCGACGTCGTCGAGTGGGATTTATTCGAGTGATGGGACGGTGAGAATGGTGGGAGTGTCGGGGATATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAAGAGTTTGCAGGATGCTTTTCAGGATTTGAATGCGCTTATGAGCAAGGCTAAAGAGATGGTCATGCTAGCGGAAAAAATGAGGCAAAAACTTTTGTCAGGCTCAAGTTCTCAAATGAATGCAACTAACGATGAAGAGATGGGTTCAAAGGAAGAAATGCAAGAATTGTTATTGAGTGTTGGTATAATATCCCCTGTTACAAAAGAGTCTGCGGGTGCTCTGTATCATCAACAGTTATCTCGCCAGTTGGCAGATTTTGTTAAAGTTCCACTAGAGAGAGCTGGAGGAATTATCAATCTAATTGATATTTATTGTCTCTTCAATCGTGCTCGTGGAACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGCTCTCTGTGGGAGAAGTTTGATGTCCCAATTGTTCTGCGGAAGTTTGATAGCGGCGTCATGGTAATTCAAAATAAGTCCCACAGTGATGAAGAGGTTTTCACTAAAATTAAGGTGCTTGTTATGAAGCCTGATGCTCTTCGAGCTGGGATAAGTCCTAGTGATGCTGCAATGACACTGGGAGTTGCCCCAGCAATGGCAAAGGAACATCTCTTGTCTGCCGAGAGCAAGGGTATACTTTGTAGAGATGTCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTCCCAGAAATTGATCGAGATGATATGTATTTAGTGAAAGATCAGGGGATTTATTCCTCATGGGTTGGAGCAATCCCTTCTCATGGTTAG 1347 0.4803 MTGNSLPAVKLTDSGRPVLLPNEIECFFLSGVDLLSEDEPNTWFPHLKSGLLILTTHRLLWLPEAAVAASSSSVAVPLASISHIFPHKKSLKSVFASPRVRFQVSPSPERGVASSGSRSVVATVVARGKGDCDAFVSKFWENWRGRAWEESESATSSSSNAAARAASTSSSGIYSSDGTVRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLLSGSSSQMNATNDEEMGSKEEMQELLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLERAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVPIVLRKFDSGVMVIQNKSHSDEEVFTKIKVLVMKPDALRAGISPSDAAMTLGVAPAMAKEHLLSAESKGILCRDVSPDGFRFYINLFPEIDRDDMYLVKDQGIYSSWVGAIPSHG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00481 448 Gene3D - 198 271 - -
Vifa4g00481 448 SUPERFAMILY "Winged helix" DNA-binding domain 311 423 IPR036390 -
Vifa4g00481 448 Pfam Vacuolar protein sorting protein 36 Vps36 11 104 IPR021648 GO:0032266|GO:0043130
Vifa4g00481 448 SUPERFAMILY PH domain-like 5 125 - -
Vifa4g00481 448 FunFam vacuolar protein sorting-associated protein 36-like 351 422 - -
Vifa4g00481 448 ProSiteProfiles GLUE domain profile. 9 155 IPR021648 GO:0032266|GO:0043130
Vifa4g00481 448 FunFam Vacuolar protein sorting protein (Vps36) 272 349 - -
Vifa4g00481 448 Gene3D - 272 349 IPR036388 -
Vifa4g00481 448 Pfam EAP30/Vps36 family 183 407 IPR040608 -
Vifa4g00481 448 Gene3D - 10 155 IPR011993 -
Vifa4g00481 448 Gene3D - 351 422 IPR036388 -
Vifa4g00481 448 FunFam Vacuolar protein sorting-associated protein 36 4 146 - -
Vifa4g00481 448 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 8 420 IPR037855 GO:0000814|GO:0032509|GO:0043130