LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g00476	ATGGCTAAACAACTTCATCATTCACAGAATCTACTCCTTCTAATCTTCTTTCTCTCCATCATCCATCTTTCACACCAGTTACAATTCTCACACTCTCAAACCCTTCTCAAACTCCAACAACTTCTTGGCTACCCTTCATCTCTATCAACCTTAACCACCACCAAAGATTTCTGCAACATTGAACCTACACCTTACTTAACACTAGTCTGCTACGAACAAAACTTAACACAGTTACATCTTGTAGGAAACAACAACAACAACTTCACCACCTCATTGCCTCAAAACTTCAACTCACACACTTTCTTTTCAACACTTTCCACTCTCTCAACCTTGAAAGTCCTCTCTTTGGTTTCTCTTGGCTTATGGGGCCCTCTACCTGAAACCATAGCTGAATTGTCCTCATTGGAGATACTCAACATTAGCTCAAACTACTTCACTGGAGAAATACCAGTTCACCTTTCATATCTCAACAATCTTCAATCACTAGTACTTGATGATAACAACTTCAATGGTGAAATTCCAAACTTGTTAACCTCTCTTCAAGGTTTGGTTGTTCTTAGCATGAAGAAGAATTTTCTTACAGGTAACTTGCCAAATTCAATGAATGATCTTGTTACTCTTAGAGTTTTGGATCTGTCAAATAATCAACTGTTTGGTGAATTACCTCATTTTCATAACTTGGTTAACCTTCAAGTTCTTCACTTGGAAAACAACTTATTAGGACCTCATTTTCCTTCTCTTCCTACAAAGCTAGTTTCACTTGTGCTTAGAAACAACAGTTTTAGGCTTGGTGTACCTTCTAATATAAGTTCATTCTATCAGCTTCAAAAATTGGACCTTTCATTGAATGGCTTTGTAGGGCCATTTCCGCCGTCTTTGTTGTCGCTTCCTTCCATAAATTACATCGATGTTTCATCGAATAAGTTCACTGGTATGCTTTTCGAGAATTTTTCGTGTAATGGGGATCTTCGGTTTGTGAATTTGTCTTCAAATCTTTTGAAAGGTGAACTGCCTAGTTGTTTGAGACAGAAAACAAAGGTTGTTTTGTATGCTAGAAACTGTTTATCAAATGAGAAGAAACAAGCTCAACATAGTTATAGTTTTTGTAGCAGTGAAGCTCTCGCCGTGAATATTTCACCGCGTCAACAACAGAAACATAAAGGAACAACAAGTAAAGCAGTGCTTGTGTCATCAAGTATTGGAGTTGTTGGAGTATTGATTGTTGCAGTTGTTGTTTTGGTTGTTAATCAAGTTCATAAAACGAATGTTTCGAAAACACCTGAGATGTCTACTTTGGAACATGTTATTATTAGCCAAATACAGAATGAAGATAGAGGGAAAACTACTGCAAGGTCTATAGTAGAGCATATCATCAGAAGAGTTCCTGATAAAAATGCTATGAAAACATTGACAAGATTCATAAAGGAACATATCGCGAGCTTACTCGGTAACAGACGCCTTTCAAGGTCACCTTCAAGGTCCATAATAGAACATGTATCATCAGTAAACACTGCAAAACTACTCACAGATGCAAGGTGTATATCAGAAACAATGAAGATGGGAACTGGTCTTCCTGCATATAGGACCTTTTCGTTGGACCAACTTAAGGAAGCTACAAATAATTTTGAAGAGTCAAGTCTCATAAGTGAAGGTCCACTTGGTCAGATATATAAAGGGGTTCTCTCTGATGGGATGAATATTACTATTAGAGGAATGAAGATAAGAAAGAAGCACAGTCCTCAAGCCTATATGCACCATGTTGAGTTGATTTCAAAACTTAGGCATTCACACTTGGTTAGTTCACTTGGACATTCCTTCGAGTGCAACCAAGATGATTCAAGTGTCAATACTGTATTTCTCATTTTCGAGTTTGTTCAAGATAAAAGTTTAAGAAGCCGCATCTCAGGATCAAACGGAGAAAAGCTTTGTTGGACACAGAGAATAGCAGCCACAATTGGAGTAGTGAAAGGCATTCAATATTTGCATACAGGGATAGTGCCTGGACTATATTCAAATAATATCAAGATAACTGATATTCTTTTGGATAACAATCATAATGTTAAAATAAGCAGTTATAATCTTCCGATTTACGCCGAAAACAAAAGAATGGTCAGCAATGGAACTTCTCATGGAGTAAAAGGAAATCTCCAAGCAAGGATGAATGATGGAGACAAGAATGATGTGTATGATATCGGAGTAATCTTGCTAGAAATCATTCTTGGACGACCGATAATGTTCCACAATGAAGTGGGGACATTAAAAGATCTTTTACATGTAAGCATAAAAACCGATGATATAGCGAGAAGGAGTATTGTAGACCCATTTGTTCACAAGGAATGTTCAGATGAATCGTTAATGAAAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAAATGAAAGACCTTCTGTCGAAGATATTCTTTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAGAAGAGAAACAAGTGATTATAGAGACTCACCTAAATCAACCTCAAGAGAGACAAAGTTACTATGA	2535	0.3712	MAKQLHHSQNLLLLIFFLSIIHLSHQLQFSHSQTLLKLQQLLGYPSSLSTLTTTKDFCNIEPTPYLTLVCYEQNLTQLHLVGNNNNNFTTSLPQNFNSHTFFSTLSTLSTLKVLSLVSLGLWGPLPETIAELSSLEILNISSNYFTGEIPVHLSYLNNLQSLVLDDNNFNGEIPNLLTSLQGLVVLSMKKNFLTGNLPNSMNDLVTLRVLDLSNNQLFGELPHFHNLVNLQVLHLENNLLGPHFPSLPTKLVSLVLRNNSFRLGVPSNISSFYQLQKLDLSLNGFVGPFPPSLLSLPSINYIDVSSNKFTGMLFENFSCNGDLRFVNLSSNLLKGELPSCLRQKTKVVLYARNCLSNEKKQAQHSYSFCSSEALAVNISPRQQQKHKGTTSKAVLVSSSIGVVGVLIVAVVVLVVNQVHKTNVSKTPEMSTLEHVIISQIQNEDRGKTTARSIVEHIIRRVPDKNAMKTLTRFIKEHIASLLGNRRLSRSPSRSIIEHVSSVNTAKLLTDARCISETMKMGTGLPAYRTFSLDQLKEATNNFEESSLISEGPLGQIYKGVLSDGMNITIRGMKIRKKHSPQAYMHHVELISKLRHSHLVSSLGHSFECNQDDSSVNTVFLIFEFVQDKSLRSRISGSNGEKLCWTQRIAATIGVVKGIQYLHTGIVPGLYSNNIKITDILLDNNHNVKISSYNLPIYAENKRMVSNGTSHGVKGNLQARMNDGDKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLHVSIKTDDIARRSIVDPFVHKECSDESLMKMMEICVRCLSSEPNERPSVEDILWNLQFAAQVQNSWRRETSDYRDSPKSTSRETKLL	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g00476	844	Pfam	Protein kinase domain	543	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g00476	844	FunFam	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	249	374	-	-
	Vifa4g00476	844	ProSiteProfiles	Protein kinase domain profile.	542	815	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g00476	844	SUPERFAMILY	RNI-like	69	348	-	-
	Vifa4g00476	844	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	102	197	-	-
	Vifa4g00476	844	ProSiteProfiles	Leucine-rich repeat profile.	206	228	IPR001611	GO:0005515
	Vifa4g00476	844	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	112	836	-	-
	Vifa4g00476	844	FunFam	Putative inactive leucine-rich repeat receptor-like protein kinase	625	829	-	-
	Vifa4g00476	844	Gene3D	Transferase(Phosphotransferase) domain 1	626	838	-	-
	Vifa4g00476	844	FunFam	Putative inactive leucine-rich repeat receptor-like protein kinase	516	624	-	-
	Vifa4g00476	844	Gene3D	Ribonuclease Inhibitor	153	246	IPR032675	-
	Vifa4g00476	844	SUPERFAMILY	Protein kinase-like (PK-like)	521	815	IPR011009	-
	Vifa4g00476	844	Gene3D	Ribonuclease Inhibitor	247	377	IPR032675	-
	Vifa4g00476	844	Gene3D	Phosphorylase Kinase; domain 1	504	624	-	-
	Vifa4g00476	844	Gene3D	Ribonuclease Inhibitor	30	152	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g00476	Vifa-Chr4	133014151	133017613	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g00476	44	823	Miscellaneous Gene Families	AT3G03770	49.809	0.0	687

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VI-1	Vifa4g00476		Pkinase	1.5e-16	CL0016