Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00424 ATGCTGATATTAGTTCTAGGAATAACTTCAGCTACTTTGCTAGTGATTGTTGCTATTTTTGGCTTTTGTTACTTGCAAAGATCATCAAAACATGAGATTAAAGACATAGAAAGCTTAGAAGAAAAGCATCAAGAGGTGAAGGAGGATTTAATCATATTTCAAGGTGGAGAAGATTTGACAATATGTGATATATTGGATGCACCAGGGGAAGTGATTGGAAAATCTAATTATGGAACACTTTATAAGGCTTTGTTGCAAAGGAGCAACAAAGTTAGGTTATTGAGGTTTTTGAGACCTGTTTGTACTACAACAGGTGAAGAATTTGATGAAATGATTCTGTTTCTTGGAAGATTAAAGCATCCTAATTTGGTTCCTCTTTTGGGATTTTATACTGGACCAAGAGGTGAGAAGCTTCTTGTTCATCCATTTTACAGGCATGGGAATCTTACTCAGTTCATAAGAGATGGAAATGGAGAGAGTTACAAATGGACAAACATATATAAAATATCAATTGGTATAGCAAAAGGATTGGAACATCTTCACACATCACAAGAAAAACCAATTATCCATGGAAACCTAAAATCGAAAAACATCCTTTTAGACAGTTCCTATCAACCACACATCTCAGATTCAGGTCTCCATCTTCTGTTGAATCCAACTGCTGCACAAGAAATGCTTGAAAGTTCGTCTGCTCAAGGCTATAAAGCTCCTGAACTAATCAAAATGAAGGATGCTAGTGAAGAAACCGATATCTATAGCCTCGGCGTAATCTTGCTTGAATTGCTTTCAGGAAAGGAACCTATCAATGATCATCCAACTCCCGATGAGGATTTCTATTTGCCGAATTTCATGAGAAATGCTGTTCTTGGACATAGAATGTCTGATTTATATCATCCGGCTATTCTTCTCAGAAACGACGTAGATGATGAAATTCAAGTTACGGAAGAATGTGTTCTCAAATTTTTTCAACTTGCTATGGCTTGTTGTTCACCTTCACCTTCAATTAGACCTAACATTAAGCAAGTTATTAGGAAGCTTGAAGAAATTATACACTAG 1056 0.3608 MLILVLGITSATLLVIVAIFGFCYLQRSSKHEIKDIESLEEKHQEVKEDLIIFQGGEDLTICDILDAPGEVIGKSNYGTLYKALLQRSNKVRLLRFLRPVCTTTGEEFDEMILFLGRLKHPNLVPLLGFYTGPRGEKLLVHPFYRHGNLTQFIRDGNGESYKWTNIYKISIGIAKGLEHLHTSQEKPIIHGNLKSKNILLDSSYQPHISDSGLHLLLNPTAAQEMLESSSAQGYKAPELIKMKDASEETDIYSLGVILLELLSGKEPINDHPTPDEDFYLPNFMRNAVLGHRMSDLYHPAILLRNDVDDEIQVTEECVLKFFQLAMACCSPSPSIRPNIKQVIRKLEEIIH 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00424 351 Pfam Protein tyrosine and serine/threonine kinase 70 346 IPR001245 GO:0004672|GO:0006468
Vifa4g00424 351 Coils Coil 29 49 - -
Vifa4g00424 351 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00424 351 Gene3D Phosphorylase Kinase; domain 1 66 143 - -
Vifa4g00424 351 Gene3D Transferase(Phosphotransferase) domain 1 145 351 - -
Vifa4g00424 351 SUPERFAMILY Protein kinase-like (PK-like) 69 348 IPR011009 -
Vifa4g00424 351 CDD STKc_IRAK 72 349 - -
Vifa4g00424 351 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 41 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00424 Vifa-Chr4 115095756 115097047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00424 23 349 Carbohydrate Esterase AT5G61570 59.763 8.91e-140 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa4g00424 PK_Tyr_Ser-Thr 1.4e-32 CL0016