Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00420 ATGTCACTCTCATGCATCAAGACATTTTTCAAGCGGTTTTGGGTTGTTGATGAATTCCATACCGGAATTTTCCCGTATGGCAGCTTTCTGTCTACTGATATCTTGCCATCTCTTGGAGGAATCAACCCAGAAACAAGATTAAAAAAACACTTAATCTCTCCTTACAATCCAAAATATAGGGCTTGGGAGAAGTGGTTGGTAGTTCTGGTGATTTACTCTGCATGGATATGCCCTTTTCACTTTGCTTTTCTACCAGATAACCATCCAACACTGTTAATCATAGATAACATTGTCAATGCTTTCTTCGCAATCGACATAGTCTTGACATTCTTTGTTGCTTATCTTGATCATCATTCTAACCTTCTTGTCGATGATCCAAACAAAATCGCTGTCAGATACCTATGTACTTGGTTTATCTTTGATGTTTCTTCAACCGTGCCTTTGCAAGCTATTATCTCCATGTTCACTAAACATAGCGGCGCGATTGGTTTCAAATTTCTTAATATACTTCGGTTATGGCGTCTCAGACGAGTCAGTTCTTATTTTGCAAGGCTCGAGAAAGATATTCGTTTCAGTTACTTTTGGACTAGGTGTATAAAGCTCATTGCAGTGACATTGTTTGCAATACACTGTGCTGGATGCGTTATTTATTTAATCGCAGATAGGCACAGTGATTCAACTCATACATGGATTGGTTCTGTGTATCCAAATTTTAAAGAAACATCTATTTGGGATAGATATGTGACATCAATTTATTGGGCTATTGTGACACTCACTACAACAGGGTATGGTGATTTGCACCCTGTGAATCCTAAAGAAATGCTATTTGATATTTTCTTCATGTTGTTCAACTTGGGATTAGACGCTTATATCATCGGAAATATTACAAATCTTGTTCTTCAATGGACAAGCCATACCAGAACTTTTAGAGATACAGTGAAAGCAGCTTCTGAATTTGTAACAAGAAATCATCTGCCTCGTGATATACAACATCAAATATTATCACACTTATCTTTGAAGTTCAAGTCAGATAAATTAAAGCAACAAGAAACAATAAATAGCATGCCAAAAGCAATTCGTGCCGCCATTTCACACCATCTATTTTATCCAGTTGTGCAGAAATCCTATCTCTTCCAACAAGTTTCACAAGACTTTCTTTTTCAACTGATTACTGAAATGGAAGCCGAGTATTTTCCACCAAAAGAATATGTTATACTGCAAAATGAGTCTCCAACAGATCTTTACATGCTGGTTTCAGGATCAGTGGAGCTCATTCACACTGTTTACAGTTATGAACAAGTTTTGAAGAAGGAAAATGTAGGAGATACATTTGGAGAAATTGGAGTTCTATACAACAGACGACAACCTTACAGTGTTAGGTCGAGAGAGCTTTCGCAAATATTGAAACTTAGCAGAACTTCGTTGATGAATGTCATACATGCAAATCCAGAAGCAGCACAACTTATAATGACAAATCTTTTCATGAGGTTAAAAGCTGAAAAAGATTTTAAATATCCACCTATATGTCCTAAATTGGCACTTCATGACATGCTTCATGGGAACAACACAAAGGAAAATCCATGTTTTACAAGTACAAATGTTTCGCCCGGGGAAGCTATGTTGTATGAGATGATACCAGACATAGATGAAAATCAGCAAGAAAAAGAAGCAAATGAAAAGAGACTAAATCGTGTTAGATGGAAACAAAAATCTCAAGATGACGAGCAACAAAACACGACTCATCATGAGTATGAGTATGGAACAAGTAATCATTCAATCTCAAGAAAACAAGCTAACAATAAAAGAGTTATCATCCACTATCTTGGCCAGGACGAAATTGCCTTACTGCCAAAAGGTGGAAAGCTGATCATTCTTCCTGATTCAATAGAAGAGCTTCTCGAGATTGCAGGAAAAAAGTTTGGAATGCCAAAGCCAAACATAATCAAAAGTGCAGAAGATGCGGAGATAGATGATTTATGTGTCATTCGAGACAAAGATCATCTGTTTTTTCTTTGCAATCACAAAGAAGTTTTGAGCTAA 2040 0.3672 MSLSCIKTFFKRFWVVDEFHTGIFPYGSFLSTDILPSLGGINPETRLKKHLISPYNPKYRAWEKWLVVLVIYSAWICPFHFAFLPDNHPTLLIIDNIVNAFFAIDIVLTFFVAYLDHHSNLLVDDPNKIAVRYLCTWFIFDVSSTVPLQAIISMFTKHSGAIGFKFLNILRLWRLRRVSSYFARLEKDIRFSYFWTRCIKLIAVTLFAIHCAGCVIYLIADRHSDSTHTWIGSVYPNFKETSIWDRYVTSIYWAIVTLTTTGYGDLHPVNPKEMLFDIFFMLFNLGLDAYIIGNITNLVLQWTSHTRTFRDTVKAASEFVTRNHLPRDIQHQILSHLSLKFKSDKLKQQETINSMPKAIRAAISHHLFYPVVQKSYLFQQVSQDFLFQLITEMEAEYFPPKEYVILQNESPTDLYMLVSGSVELIHTVYSYEQVLKKENVGDTFGEIGVLYNRRQPYSVRSRELSQILKLSRTSLMNVIHANPEAAQLIMTNLFMRLKAEKDFKYPPICPKLALHDMLHGNNTKENPCFTSTNVSPGEAMLYEMIPDIDENQQEKEANEKRLNRVRWKQKSQDDEQQNTTHHEYEYGTSNHSISRKQANNKRVIIHYLGQDEIALLPKGGKLIILPDSIEELLEIAGKKFGMPKPNIIKSAEDAEIDDLCVIRDKDHLFFLCNHKEVLS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00420 679 Gene3D Jelly Rolls 370 503 IPR014710 -
Vifa4g00420 679 Pfam Cyclic nucleotide-binding domain 396 480 IPR000595 -
Vifa4g00420 679 Gene3D - 64 300 - -
Vifa4g00420 679 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Vifa4g00420 679 FunFam Potassium channel KAT3 61 301 - -
Vifa4g00420 679 PANTHER POTASSIUM CHANNEL AKT1 28 500 IPR045319 GO:0005249|GO:0006813
Vifa4g00420 679 ProSiteProfiles KHA domain profile. 602 679 IPR021789 -
Vifa4g00420 679 Pfam KHA, dimerisation domain of potassium ion channel 601 670 IPR021789 -
Vifa4g00420 679 MobiDBLite consensus disorder prediction 555 581 - -
Vifa4g00420 679 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g00420 679 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g00420 679 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g00420 679 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g00420 679 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g00420 679 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g00420 679 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Vifa4g00420 679 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Vifa4g00420 679 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa4g00420 679 CDD CAP_ED 377 490 IPR000595 -
Vifa4g00420 679 FunFam Potassium channel KAT2 365 501 - -
Vifa4g00420 679 SMART cnmp_10 377 494 IPR000595 -
Vifa4g00420 679 Gene3D Helix hairpin bin 301 367 - -
Vifa4g00420 679 MobiDBLite consensus disorder prediction 555 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00420 Vifa-Chr4 113882703 113886007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00420 1 673 Ion Channels AT5G46240 54.167 0.0 752
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00420 4 113882703 113886007 Vifa4g00420 4 113882703 113886007 ECH