Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00403 ATGAAGCTTACACGTTCCTCGTTTCTTGTGACTTTGGCTCTTCTCATGGCCACCACTCTCTCATCAGATCCTGACTCTCTTCAAGACCCCTGTGTCGCAGACCTTTCCTCAGGTGTGACAGTGAACGGATTCACTTGCAAGGAGGCATCCAAGGTAAATGTCTCTGATTTCTCCTCCAACATACTAGCCAAACCAGGATCCACCAACAACACACATGGCTCCGTCGTGACTGGAGCCAATGTTCAGAAAGTCCCGGGACTCAACACACTTGGCGTGTCTCTGTCGAGGATTGACGATGCCCCAGGCGGCCTCAACCCACCTCACACTCATCCTCGAGCTACCGAGGTTGTGTTTATGCTTGAAGGGGAACTAGATGTTGGGTTCATAACTACAGCCAATGTTCTCATATCAAAGACCATTAGAAAGGGTGAGATATTTGTGTTCCCAAAAGGTTTGGTTCATTTCCAAAAGAACAATGGCAATGTACCTGCTGCTGTTCTTTCAGCCTTTAACAGCCAACTTCCTGGTACACAATCCATTGCTATTACATTATTTGCAGCTCTTCCATCTGAGCAGCAAATGCGAGCATTTGCACCGGCTTCATCTGGATTTCGCAAGGTGATATTGGCAACTACTATTGCTGAGACATCAATTACGATTCCTGGAATCAAGTATGTAATTGATCCTGGACTTGTAAAAGCGCGTTCCTATGACCCTGGAAAAGGCATGGAATCTTTGATTGTAGTACCTACATCCAAGTCCGAGGCACTTCAAAGAAGTGGACGTTCAGGGCGTGAAGGACCTGGAAAATGCTTTCGTCTATATCCAGAAAATGAATTCGAGAAAATTGAGGACTCTACAATGCCAGAAATTAAGCGCTGCAACCTTGCTAATGTGATTTTGCAGCTTAAGGCTTTGGGTGTTGACGACATATTAGGATTCGATTTCATTGAGAAACCTTCAAGGACAGCTATTGTAAAATCATTGGAGCAACTATTTTTATTAGGTGCTTTAACAGATGACTGTCAACTATCTGATCCAGTTGGACGGCAAATGGCTCGACTGCCCTTGGATCCTATTTATTCCAAAGCTCTTATTTTAGCTAGTAAGAATGGAAACTAA 1122 0.4439 MKLTRSSFLVTLALLMATTLSSDPDSLQDPCVADLSSGVTVNGFTCKEASKVNVSDFSSNILAKPGSTNNTHGSVVTGANVQKVPGLNTLGVSLSRIDDAPGGLNPPHTHPRATEVVFMLEGELDVGFITTANVLISKTIRKGEIFVFPKGLVHFQKNNGNVPAAVLSAFNSQLPGTQSIAITLFAALPSEQQMRAFAPASSGFRKVILATTIAETSITIPGIKYVIDPGLVKARSYDPGKGMESLIVVPTSKSEALQRSGRSGREGPGKCFRLYPENEFEKIEDSTMPEIKRCNLANVILQLKALGVDDILGFDFIEKPSRTAIVKSLEQLFLLGALTDDCQLSDPVGRQMARLPLDPIYSKALILASKNGN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00403 373 Gene3D Jelly Rolls 22 204 IPR014710 -
Vifa4g00403 373 SMART Cupin_1_3 59 205 IPR006045 -
Vifa4g00403 373 FunFam germin-like protein subfamily 2 member 1 22 206 - -
Vifa4g00403 373 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 289 332 - -
Vifa4g00403 373 Pfam Helicase associated domain (HA2) 328 370 IPR007502 GO:0004386
Vifa4g00403 373 CDD SF2_C_RHA 182 275 - -
Vifa4g00403 373 Pfam Cupin 62 197 IPR006045 -
Vifa4g00403 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 370 IPR027417 -
Vifa4g00403 373 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Vifa4g00403 373 SMART helicmild6 165 267 IPR001650 -
Vifa4g00403 373 PANTHER ATP-DEPENDENT RNA HELICASE 145 369 - -
Vifa4g00403 373 CDD cupin_OxOx 23 186 IPR001929 GO:0030145
Vifa4g00403 373 Gene3D - 288 333 IPR042035 -
Vifa4g00403 373 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Vifa4g00403 373 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Vifa4g00403 373 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Vifa4g00403 373 Pfam Helicase conserved C-terminal domain 178 266 IPR001650 -
Vifa4g00403 373 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 139 307 IPR001650 -
Vifa4g00403 373 SUPERFAMILY RmlC-like cupins 23 199 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00403 Vifa-Chr4 108647884 108649097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00403 9 207 Miscellaneous Gene Families AT3G05930 53.202 4.68e-68 212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00403 4 108647884 108649097 Vifa1g08687 1 1370494390 1370495019 PCT