Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00401 ATGATGGCCTCAAAGCCTATCAACATTTCTGATATGAGTACCAACAGTTTATCAGAAAAATCTCACAAGACAAATCAAAGTTGTGCAAATGATCACCCAGAAAGTGATGATACCAGAAAGGTGAATAACCAAGAAGAAAGCGAAAACAATGCAAAAAAAAATACAAGTAAAGATTCATCATCATGTTCACCATTGCAGCCTCAAAAGTTAGAAACACTATTGAGAAACTTGTCTGAATTTTCAACTTCTCCAAGACAAACTCCAAGAAGAATGATTTCAAAGAGTGCAACAAGTTCACGTAGTGATAGTTTAGAAAGCACAAGTAGTTCACATAATAAGCCACACACAGGAGGTGACGTGAGATGGGATGCAATCAACATGGTTTCCAAAGGGTCAAAATGTAATCTCAACTTTAGTCATTTTAGGCTTGTGAAACGCGTTGGTTATGGTGACATTGGAAGTGTTTATCTTGTTGAGCTAAAAGGAACAGGGACATTCTACGCTATGAAAGTTATGGTTAAGGCTTCACTTGCTAGCAGGAACAAGCTTCTTAGGGCACAGACTGAGAGGGAGATTCTTGGACTTCTTGATCATCCTTTCTTACCAACTTTGTATTCTCATTTTGAAAATGATAAGTATTACAGTTTGGTTATGGAGTTTTGTAGTTGTGGTAGTTTGCATTCACTCCGATTGAAGCAACCCAACAGGCATTTCACTGAAGAGGCTGCAAGGTTTTATTGTTCAGAGATTCTATTAGCATTGGAGTATCTACACATGCTAGGAATAGTATACAGAGATTTAAAACCAGAAAACGTTCTAGTCCGAGACGAAGGCCACATAATGCTATCCGATTTCGACTTATCCCTGCGTTGTTCCGTTAACCCTACGCTCGTAAAATCCTCCTCCGCACACGTAACCACCACATCCATGGGAATCCTGGACGACGAAAACATTGTCCAGAGTTGCATGCAACCATCAAGTTTCTTCTTCCCGCGGATCCTCCCCTACAAGAAAAACAGAAAATCAAAGTCAGATTTCGGTCTCATAGGCGGCCGTCTTCCAGAACTAATGGCAGAACCAACGAACGTCCGATCAATGTCGTTCGTTGGTACACACGAGTATCTCGCCCCGGAAATCGTCCGCGGTGAAGGACATGGAAGTGCAGTTGATTGGTGGACGTTTGGGATATTTTTATACGAGCTTATATACGGAACAACGCCGTTTAAAGGTAATGGAAACCGTGCTACTCTTTTTAACGTTGTTGGACAGCCATTAAGGTTTCCTCAGCATCCTTCAGCTAGTCCTGTTGCACGAGATCTTATTAGAGGGTTGTTGGTTAAAGAACCTCATAAGAGAATTGCTTATAAAAGAGGTGCAACTGAGATTAAACAACATCCATTTTTTGAAGGGGTTAATTGGGCTTTGATTCGAAGTTCTAGTCCTCCTATTATACCTGAAACGTTTGATTTTAGTCGGTATGTTAGTAAAGAAGCTGTTGTTGTGGCAGCTGAGGTTGATAAGAATGTTGTTGATAAAAAACAAGATGGTGGTAAGATGCAGGATGATTCTTCTTATGAAGATTTTGAGTATTTTTAG 1596 0.4023 MMASKPINISDMSTNSLSEKSHKTNQSCANDHPESDDTRKVNNQEESENNAKKNTSKDSSSCSPLQPQKLETLLRNLSEFSTSPRQTPRRMISKSATSSRSDSLESTSSSHNKPHTGGDVRWDAINMVSKGSKCNLNFSHFRLVKRVGYGDIGSVYLVELKGTGTFYAMKVMVKASLASRNKLLRAQTEREILGLLDHPFLPTLYSHFENDKYYSLVMEFCSCGSLHSLRLKQPNRHFTEEAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHVTTTSMGILDDENIVQSCMQPSSFFFPRILPYKKNRKSKSDFGLIGGRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELIYGTTPFKGNGNRATLFNVVGQPLRFPQHPSASPVARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFEGVNWALIRSSSPPIIPETFDFSRYVSKEAVVVAAEVDKNVVDKKQDGGKMQDDSSYEDFEYF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00401 531 MobiDBLite consensus disorder prediction 7 24 - -
Vifa4g00401 531 FunFam serine/threonine-protein kinase D6PK-like 225 292 - -
Vifa4g00401 531 MobiDBLite consensus disorder prediction 25 53 - -
Vifa4g00401 531 MobiDBLite consensus disorder prediction 78 115 - -
Vifa4g00401 531 MobiDBLite consensus disorder prediction 78 120 - -
Vifa4g00401 531 ProSiteProfiles Protein kinase domain profile. 141 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00401 531 FunFam Serine/threonine-protein kinase AGC1-7 361 486 - -
Vifa4g00401 531 Pfam Protein kinase domain 362 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00401 531 Pfam Protein kinase domain 142 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00401 531 PANTHER FLIPPASE KINASE 1-RELATED 23 491 - -
Vifa4g00401 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vifa4g00401 531 Gene3D Phosphorylase Kinase; domain 1 139 224 - -
Vifa4g00401 531 CDD STKc_phototropin_like 139 486 - -
Vifa4g00401 531 SUPERFAMILY Protein kinase-like (PK-like) 125 495 IPR011009 -
Vifa4g00401 531 Gene3D Transferase(Phosphotransferase) domain 1 362 486 - -
Vifa4g00401 531 Gene3D Transferase(Phosphotransferase) domain 1 225 295 - -
Vifa4g00401 531 SMART serkin_6 141 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00401 531 MobiDBLite consensus disorder prediction 1 65 - -
Vifa4g00401 531 FunFam Serine/Threonine Kinase 139 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00401 Vifa-Chr4 107043457 107045483 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa4g00401 Pkinase 3.9e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00401 4 107043457 107045483 Vifa4g00401 4 107043457 107045483 ECH