Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00396 ATGCTTGTTTATGTGGCAACATCATTGGACCTAAGTTGGTTTCTTGGGTTGTTTGGTTCCACTGAAAAGAAAGCACACATTTGTGATCATAGCAATAAAGTGGATGAGTCTAATTCGTCACGAGGTTACATATTATTGATAATTGTGATTGCTCTTGTGTTGTTGATGTTCTATTGGACTGGAGAAAACAAAGAAAACAATTCCAATATCAATGAGGTCGATGATGAGGAAGAAGAACCTGAGTATCCCGTGGATGAACAACAACTCATTCCCCAGGAATCCGAGCACCAAGGTGCGTCTTCAAGAGACGTTATTCCATGTGCCTTCTGTGGCAATTCAAGTACCACAAGATGTGCTCGCTGCAAGGTTGCTAGGTACTGCTCAGGAGGATGCCAAATAGAACATTGGAGGTCAGGACATAGATATGAATGCATCCAATTAGAGAGTGAAGAAGGTGAACCAAGAAATGCTCATGAAGAACAAACTCATATGCTTGTGGACAAGTATGATAATGAGAATAACCCAAATGGGTCTGTGAGTTCCAATAGTAGCAGTAGTAATGTGAAGAACTCTGAATCTGATGTTGGGTGTGAACAATGTGGCAGACCAAGTACCACCAAATGTTCACGATGCAAATCTGTCAGATACTGCTCTACAAAGTGTTTGATTACCAATTGGAGATGGCATAAATATACCTGCATTGCAGGAGATGTCAATTCAGCTCAACCAGAAACACCTAGTAGAAACGTTGAATTGCTCAAGAACTCAAATGAGGAGGAAGAGAAAATTCATTCACCTAGGCCACTTTATTTGGAGCTTCATCCTGTCACTACTACCAAGGAAGTACAAGTGCATACAACTCAATGGGAGAAACACCTTGAAGATGAACTAGTAAAATCTAGGAAAGAGAATTTCGAACTACGGTCAGAGCGTGACCAGTGGAAGAAGCGAGCGAGTTTTGCTAGAGATAGATTTCAAAGTTTCAAGGAAGAATCTGAAAAACAATTGTCTGTGTTGAGAAATGAAAATGAGTCAATATCAAATGCTGAGAAGAAAGGTGCCAATGTGATTCAAAGTTTACATGAGAGGCTAAACCACTTGCAGATTGCAGCACAAGATAGCATTGCAAAGAAGAGAAAGTTAGAAAAACATATACAAATGGTAGAGAGCGAACGTACTAAGCTGAAGAAAGAACTAGAAGAACAGCATAAAGATATTAAGTATCTTACACTAGAATCTAAAATGAGTCACGAGACAGCACAAACTGCCATAAGAGAAGTTGAAGCATTAAAACAAGAGCTTATAGAAGAGCGCAAAAATGTTCAACGAATTAAAGCGAATTTTATTAGAGATACAACATTCTCCAATTCAAAAGCTATCGTTGCTGAGGCAAAACTCAGTGATCTTCAGAGAAAAACAAAATTGAAAGATTATAAGGCATGCACTATATGTCTGACTAATGAGAAGGACATGGCTTTTGGGTGTGGACACATGACTTGCAGAGACTGTGGATCAAAACTATCAAAGTGTCCAATATGTCGTGAGCAGATCACGAGTCATATTAAATTGTTTTCTGGCTGA 1581 0.3909 MLVYVATSLDLSWFLGLFGSTEKKAHICDHSNKVDESNSSRGYILLIIVIALVLLMFYWTGENKENNSNINEVDDEEEEPEYPVDEQQLIPQESEHQGASSRDVIPCAFCGNSSTTRCARCKVARYCSGGCQIEHWRSGHRYECIQLESEEGEPRNAHEEQTHMLVDKYDNENNPNGSVSSNSSSSNVKNSESDVGCEQCGRPSTTKCSRCKSVRYCSTKCLITNWRWHKYTCIAGDVNSAQPETPSRNVELLKNSNEEEEKIHSPRPLYLELHPVTTTKEVQVHTTQWEKHLEDELVKSRKENFELRSERDQWKKRASFARDRFQSFKEESEKQLSVLRNENESISNAEKKGANVIQSLHERLNHLQIAAQDSIAKKRKLEKHIQMVESERTKLKKELEEQHKDIKYLTLESKMSHETAQTAIREVEALKQELIEERKNVQRIKANFIRDTTFSNSKAIVAEAKLSDLQRKTKLKDYKACTICLTNEKDMAFGCGHMTCRDCGSKLSKCPICREQITSHIKLFSG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00396 526 ProSitePatterns Zinc finger MYND-type signature. 197 233 IPR002893 -
Vifa4g00396 526 SUPERFAMILY HIT/MYND zinc finger-like 105 147 - -
Vifa4g00396 526 ProSiteProfiles Zinc finger RING-type profile. 481 514 IPR001841 -
Vifa4g00396 526 SMART ring_2 481 513 IPR001841 -
Vifa4g00396 526 ProSitePatterns Zinc finger MYND-type signature. 107 144 IPR002893 -
Vifa4g00396 526 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 315 524 - -
Vifa4g00396 526 SUPERFAMILY HIT/MYND zinc finger-like 196 234 - -
Vifa4g00396 526 Coils Coil 417 447 - -
Vifa4g00396 526 MobiDBLite consensus disorder prediction 168 204 - -
Vifa4g00396 526 Gene3D - 181 236 - -
Vifa4g00396 526 Gene3D - 90 149 - -
Vifa4g00396 526 SUPERFAMILY RING/U-box 480 520 - -
Vifa4g00396 526 Pfam MYND finger 197 233 IPR002893 -
Vifa4g00396 526 Pfam MYND finger 107 144 IPR002893 -
Vifa4g00396 526 ProSiteProfiles Zinc finger MYND-type profile. 107 144 IPR002893 -
Vifa4g00396 526 Coils Coil 329 349 - -
Vifa4g00396 526 Pfam Zinc finger, C3HC4 type (RING finger) 479 519 - -
Vifa4g00396 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 525 IPR013083 -
Vifa4g00396 526 Coils Coil 371 405 - -
Vifa4g00396 526 ProSiteProfiles Zinc finger MYND-type profile. 197 233 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00396 Vifa-Chr4 105296557 105299810 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00396 98 144 Miscellaneous Gene Families AT4G31670 46.154 6.59e-08 53.5