Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00304 ATGGCGAAAACGAGACCAGGCAAAAAGGATTTAGACTCATATACAATCAGAGGCACAAACAAGATCGTAAGAGGCGGAGAATGTGTTCTGATGCGACCTACGGACACATCAAAACCCCCGTACGTAGCTCACGTGGAGAAGATAGAACAAGACAACAGAAACAACGTGAGAGTGCGCGTGAGGTGGTATTACAGACCCGAGGAATCAATTGGGGGTCGCAGACAGTTTCATGGTGCTAAAGAGCTTTTTCTCTCTGACCATTATGATGTTCAGAGTGCTCACACTATTGAAGGGAAATGTGTTGTTCATTCTTTTAAGAATTATACTAAGCTTGACAATGTAGGTTCTGAGGATTATTATTGTAGATTTGAGTATAAGGCTGCTACCGGTGCTTTCACTCCTGACCGGGTCGCCGTGTATTGCAAATGTGAAATGCCGTATAACCCGGATGACCTCATGGTACAATGCGAGGGCTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCGTGACTATTGAAGAAGCAAAGAAATTGGACCATTTTGTTTGTGCTGAATGTTCATCTGATGACGACATAAAGAAACCCCAAACTACATTTTCTTCATCTCCTGGATCTGATAGCAAGGTGGAGCCTAAGCGGCGGAAGAGAGGACCATAA 657 0.449 MAKTRPGKKDLDSYTIRGTNKIVRGGECVLMRPTDTSKPPYVAHVEKIEQDNRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLDNVGSEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGVTIEEAKKLDHFVCAECSSDDDIKKPQTTFSSSPGSDSKVEPKRRKRGP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00304 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 199 IPR013083 -
Vifa4g00304 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Vifa4g00304 218 Pfam PHD-finger 140 188 IPR019787 -
Vifa4g00304 218 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Vifa4g00304 218 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Vifa4g00304 218 SMART PHD_3 140 187 IPR001965 -
Vifa4g00304 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vifa4g00304 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Vifa4g00304 218 Gene3D - 2 134 IPR043151 -
Vifa4g00304 218 MobiDBLite consensus disorder prediction 190 218 - -
Vifa4g00304 218 PANTHER OS08G0421900 PROTEIN 1 208 - -
Vifa4g00304 218 FunFam Chromatin remodeling protein EBS 1 132 - -
Vifa4g00304 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vifa4g00304 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00304 Vifa-Chr4 69618450 69621747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00304 31 132 Core DNA Replication Machinery Family AT4G14700 28.155 7.80e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa4g00304 BAH 2.2e-22 No_clan