Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00281 ATGGGCAGTGATGCACTGAGAAGCGAAGGGTACTATACGCTCAACGATTTGAGTTTCGATTTCAAGGAATATGAAGGAACTTTCTCTATCTGCTTTTGGGTTTATTTCATGAATTCAACTACATTCCCTTCTGTCATTCTTCATCAGGTTCACGATGATGTTTCTGAAAGTGCTCCTTTTCTTGTGATTAGCGACAATAACAAAATCAATGTTTTCCCAGTTCTTTACTTACATGAAGGAGCTTCTGCAACTTGCATGGGTTCTTGGACAGAAGTTCCACATGCTACTGTCGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATATTGGATGCGAGGTTTGTCCAAATTACATTCAGCTTCACATTAATGGGGAAGTTGTAGGAGAAAAGTCAATGTCTTCCTTATTAAATAAGGAATCCAATTCAAATAATTTGAAGGGAATAACTTTGGCTAATGTATGTGGAGACAGAAATATTGTGCAGGGTTATGTGCACAACTTTGAAGGATTCCATACTGTTTCTTCCATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCATCTGTCTCTGAGGTTGAAGAAGAAAGTGACGGTGTTTGGGGCATTGTCGGTGGAAAAGTAAGAAAGATATTCTGCACACAACACACTGCATCATGTCGGAGGAACTTTTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAACCTGTACATAAGGATAATGAGGTTTTTGCTTCACTTGTATATGCTGACACGGGGGCTCCAGTGGAGAATACAACTGATGATGAAGCCCCTCTTTTGACTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGACCTAGTAAGTTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCAAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTGTGTGCCAAAATTAGGAAATTATCCTTTCCTTCAGACAGACACCCGTCCAATTCGATGCATCTCTAGGAGCCGTAACAGTAAATTGTCCACGTTGGTGTGGAAAAAGTCAACACATGCTCTCCAAAGACTCAATTTGTCACAATCTTCAGCAATTGAAGAAGTGTCGTTGGAACGTATGAATTCTAGCCATGAAGAAAAAACCAATCCACTGATGAAGCGGTTTAGAGTTGGACTTGACAAGATATCAATATCAGTTATGACCGAGCCCAACTTAAAGCAATCTGGTGTGGAATGTAATTCTCACGTATCGACTGCTAATCAGGTTGAAAATGGGTTTCCTGAAAGCTTGGATGACAGATCTCTTAATGAAGAAGCAGACGACTCTCCTTCTGAATCATCAGAGAGTACAGGGGAGAGAAACTCACCTTCCAATAATATGGAAAGTAGAAGATACCCAATATCTGATATGACCATTTTCAAATACTGCCTAGGAGGCTTGGCTGAGAGATCTCATATGCTTAAAGAAATTGCCATCTCTGCTTCTGATGAAGACATTTCAGCGTTGGCTTATCATGTTTCTCACTATTCAGGATGTTCCCACCATGGAAACCAAATATTAATTTCCAAGAGGTTGATAGAAGATGGAACAAATCTTTGGATGGCGATGTCTCCAAACAAAAACCACGTTCCTTGGGAAAGAGCGGTGTATGAGATTGAAGAGAAATTCATGAAGATTGCTTCTCGTGGATCAAGATCTCTATCCCGTCAGGACTTTGAGATTCTACGAAGGATTGCTGGATGTGAAGAGTATTTAACACAGGAGAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCGTGTGTAATATCCAGGGACTGGGTAAATCCTATATGGAATTCCATATCACCTAAATGGATTGAAGGATTCATCACCAAAGAGGATGCAGAAGCTTCACTTCAAGGCCCGGGAGGATTTCAAGAACCTGGTACTTTTATACTACGGTTCCCAACCTCAAGAAGCTGGCCTCACCCAGATGCTGGTAGCCTAACGGTTACTTATGTTGGCAGTGACTACAAACTTCGCCACAGGCTACTTTCAATGGATCATATATATCGCTCTGACAGAATAACTGACGTGAAACCATTGCAAGATATGCTACTGGCAGAACCCGAGCTGACTCGGTTGGGGAGGGTAATAAGAAGGTATTAA 2166 0.4067 MGSDALRSEGYYTLNDLSFDFKEYEGTFSICFWVYFMNSTTFPSVILHQVHDDVSESAPFLVISDNNKINVFPVLYLHEGASATCMGSWTEVPHATVDFEFPLEKWVHIGCEVCPNYIQLHINGEVVGEKSMSSLLNKESNSNNLKGITLANVCGDRNIVQGYVHNFEGFHTVSSIKDHHLKDPPLKLSIDESSVSEVEEESDGVWGIVGGKVRKIFCTQHTASCRRNFSLDVVLSDAFGQPVHKDNEVFASLVYADTGAPVENTTDDEAPLLTSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDNRLFLIRFCVPKLGNYPFLQTDTRPIRCISRSRNSKLSTLVWKKSTHALQRLNLSQSSAIEEVSLERMNSSHEEKTNPLMKRFRVGLDKISISVMTEPNLKQSGVECNSHVSTANQVENGFPESLDDRSLNEEADDSPSESSESTGERNSPSNNMESRRYPISDMTIFKYCLGGLAERSHMLKEIAISASDEDISALAYHVSHYSGCSHHGNQILISKRLIEDGTNLWMAMSPNKNHVPWERAVYEIEEKFMKIASRGSRSLSRQDFEILRRIAGCEEYLTQENFEKLWCWLYPVACVISRDWVNPIWNSISPKWIEGFITKEDAEASLQGPGGFQEPGTFILRFPTSRSWPHPDAGSLTVTYVGSDYKLRHRLLSMDHIYRSDRITDVKPLQDMLLAEPELTRLGRVIRRY 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00281 721 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 166 IPR013320 -
Vifa4g00281 721 ProSiteProfiles Src homology 2 (SH2) domain profile. 624 721 IPR000980 -
Vifa4g00281 721 MobiDBLite consensus disorder prediction 424 467 - -
Vifa4g00281 721 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 20 711 IPR001217 GO:0003700|GO:0006355|GO:0007165
Vifa4g00281 721 SUPERFAMILY SH2 domain 619 714 IPR036860 -
Vifa4g00281 721 Gene3D SH2 domain 612 719 IPR036860 -
Vifa4g00281 721 MobiDBLite consensus disorder prediction 452 467 - -
Vifa4g00281 721 Gene3D - 4 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00281 Vifa-Chr4 60362021 60384033 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Vifa4g00281 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00281 4 60362021 60384033 Vifa4g00281 4 60362021 60384033 ECH