Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00273 ATGGATCTTCCTCCAAACAAAAGACACAGATTCATTCAACAACAACAACAACAACATAATTCATGTTCACCATTACCCACCAAAAAACGCAAAGAATCTCGAAACTCATCGCTTTTTCACACCCCACCATCAACACCATCACCCTCCATCTATTCTCTACCCACCAAAAAACGAGTCTCCGCCCTTCAACCCCATTTTCACCACCTCGATACCACCCCAAACGACGCTGTTATCCATCCACTCATAGACCTCAACGTCGAATACAATCCCGATCTCCACTCGCCCATCCCAGCCGACAAACAAGACACCAACAACAACACTGATAAACAACTTGTTGCTGAAGAGGATGGGATTTTGTGCTGTGTCTGTCAAAGCACCGACGCTAACTCTGAAGATCCCATTGTTTTTTGCGACGGTTGTAACCTAATGGTCCACGCTTCCTGCTACGGAAACCCTCTAGCTAAACAAATCCCAGACGGTGATTGGTTCTGCGAACGGTGTCGTTTTACAGGTACGGATCCGATAATACGTTGCTGTCTCTGTCCAACAAAAGAAGGTGCTATGAAACAAACAATAGACGGAAAATGGGCTCACGTGGTGTGTGCTTTACTTGTTCCTGAAGTGTATTTTGTTGATCCAGAAGGGAGAGAAAAGATCGATTGTTCTAAGGTCCCAAAGAAGAGATGGTTGGAGAAATGCTATGTTTGTGGGATGTGTGATGGGTGTGCTTTGGTTTGTTCTGAACAAAAGTGTGGTTTGGGTTTTCATATTACTTGTGGGATTAAGGAAGATGTTTGTATTGAATATAAGGAAGGGAAGAAAGGTGCTACTGTTGTCGCTGGTTTTTGCAAAACCCATTCTCAAATATGGGAAAAGAACAAGGGGTCTGGGAAATACAAAATTGTTGCAGCTGAAGATCAATAG 924 0.4361 MDLPPNKRHRFIQQQQQQHNSCSPLPTKKRKESRNSSLFHTPPSTPSPSIYSLPTKKRVSALQPHFHHLDTTPNDAVIHPLIDLNVEYNPDLHSPIPADKQDTNNNTDKQLVAEEDGILCCVCQSTDANSEDPIVFCDGCNLMVHASCYGNPLAKQIPDGDWFCERCRFTGTDPIIRCCLCPTKEGAMKQTIDGKWAHVVCALLVPEVYFVDPEGREKIDCSKVPKKRWLEKCYVCGMCDGCALVCSEQKCGLGFHITCGIKEDVCIEYKEGKKGATVVAGFCKTHSQIWEKNKGSGKYKIVAAEDQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00273 307 ProSiteProfiles Extended PHD (ePHD) domain profile. 175 287 IPR034732 -
Vifa4g00273 307 MobiDBLite consensus disorder prediction 1 52 - -
Vifa4g00273 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 289 IPR013083 -
Vifa4g00273 307 Pfam PHD-finger 132 168 - -
Vifa4g00273 307 PANTHER PHD FINGER PROTEINS 39 292 - -
Vifa4g00273 307 Pfam PHD-zinc-finger like domain 177 286 - -
Vifa4g00273 307 MobiDBLite consensus disorder prediction 37 52 - -
Vifa4g00273 307 SMART PHD_3 232 287 IPR001965 -
Vifa4g00273 307 SMART PHD_3 119 168 IPR001965 -
Vifa4g00273 307 MobiDBLite consensus disorder prediction 9 24 - -
Vifa4g00273 307 CDD PHD_BRPF_JADE_like 119 167 - -
Vifa4g00273 307 ProSiteProfiles Zinc finger PHD-type profile. 117 170 IPR019787 -
Vifa4g00273 307 SUPERFAMILY FYVE/PHD zinc finger 114 184 IPR011011 -
Vifa4g00273 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 174 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00273 2 306 C2H2 Transcription Factor Family AT3G14740 46.667 2.33e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa4g00273 zf-HC5HC2H_2 1.2e-26 CL0390