Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00259 ATGATGTATGAAGTGATCCTAACTGGTTCTATGGATGGTCCCATGATAGCATTTGAGGCTTCCACAGGCGCCATTCTTGCTCAGTTCATAGGGAGCCAATCACCCTATTGCGGCTTCACGATGACATGCAAAAAACTCATTGCAACATCTCATGTGTCTTTAGATAAAGGTTCAGGCTCAATCCACATCTACAATTGGGACACTTCAACTGTCTTCCACAACATCCCTCTCCCCGAATCTGTCACTCCACTTATAGCCAATTCGGATGGTGATTTTCTATTTGCAGGTGGTGTGTCAGGGAGTATCCACTCCCTGTCACTTCCTTCTGGAGACATCATCGAATCATTTACTCCTTACTCGAAACCTGTTTCCAGCCTCCACCTTAGTAATGATGGATCACTACTGATTTCAGGTTACAGTGATGGAACTATTATTGTGATCCCATCTTTTATGCTTGTTGACGGTTCATCTTCATATAGTGACCCAATCTTACACAAATGGAAGGCACATTCTGATTCAGTGATAAGTTTTAACACTGGAATTGGGATTCATACATGTACATTTGTTTCATGTTCGATGGATTGCACGTGTAAGTTTTGGAGTTTATTAAATGGCATAACTCTAATTCGAACTGTGACATTCCCATGTTCCATTTTTGGGTTTGTTATGGATTCTACAGAGTCATTGTTCTATGCTGGTGGTTCAGATGGGTTTATTTATAAAGGGCTAGTGAAGGTTGGGAGCATTAAAATGTTAGAAAAAGGAAAAGGTTATGAATTAGTTAATTGGGGTAGTAAAACAAAAAACCATCAAGGGTCAATTGTGGCTTTGGTTTTAGTGAATAATGGGAGAAATTTGGTGTCTGCTTCAAAAAATGCAAGTGTTTGGATGTGGGATGTTGAGGAAGGTGAAGTCATTATGGTTTTGGGGAATGCTCAAATATTGAGAAGCGTTAGTGATATGATAGTGGTTAAAGGGATCAATATTATAGAGAGAAATGAGGGTGGTGAAGATGTTAATAGGGGCTTAATTAGTTCTTCTAGATTATGTGATGAAGAGATGATTAGGACTCGGATGAAACTTAGTGAGCTTGAAAATGTGATGGATGTCGCAGTTCATGACCAAGGAAGCGCCATTGATATGCTTGAATCTACGATTGCATCTTATGAGAGACTATTGAAGCTTATTCTAAGGGAAGTTACCAAAGCTATTGAAGAGGCGGATCATGAAGATGAAGACACTGATGATAAAGGAGAAAAAGATTAG 1266 0.3942 MMYEVILTGSMDGPMIAFEASTGAILAQFIGSQSPYCGFTMTCKKLIATSHVSLDKGSGSIHIYNWDTSTVFHNIPLPESVTPLIANSDGDFLFAGGVSGSIHSLSLPSGDIIESFTPYSKPVSSLHLSNDGSLLISGYSDGTIIVIPSFMLVDGSSSYSDPILHKWKAHSDSVISFNTGIGIHTCTFVSCSMDCTCKFWSLLNGITLIRTVTFPCSIFGFVMDSTESLFYAGGSDGFIYKGLVKVGSIKMLEKGKGYELVNWGSKTKNHQGSIVALVLVNNGRNLVSASKNASVWMWDVEEGEVIMVLGNAQILRSVSDMIVVKGINIIERNEGGEDVNRGLISSSRLCDEEMIRTRMKLSELENVMDVAVHDQGSAIDMLESTIASYERLLKLILREVTKAIEEADHEDEDTDDKGEKD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00259 421 Gene3D - 157 322 IPR015943 GO:0005515
Vifa4g00259 421 PANTHER WD-REPEAT PROTEIN 18 4 364 IPR045227 -
Vifa4g00259 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 304 - -
Vifa4g00259 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Vifa4g00259 421 Coils Coil 379 406 - -
Vifa4g00259 421 Gene3D - 3 156 IPR015943 GO:0005515
Vifa4g00259 421 SMART WD40_4 257 299 IPR001680 GO:0005515
Vifa4g00259 421 SMART WD40_4 68 106 IPR001680 GO:0005515
Vifa4g00259 421 SMART WD40_4 109 148 IPR001680 GO:0005515
Vifa4g00259 421 SMART WD40_4 160 201 IPR001680 GO:0005515
Vifa4g00259 421 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 6 304 IPR011047 -
Vifa4g00259 421 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00259 76 302 U-box Gene Family AT1G04510 24.895 8.38e-07 49.3