Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00249 ATGGGAGGTGGGTTTAGAGTGCTTCACTTAGTCAGACCGTTTCTATCATTCCTTCCTGAAGTTCAGACTGCAGATAGGAAAGTGCCTTTTAGAGAGAAGGTCATATATACTGTGATCTCCCTGTTCATTTTTCTGGTGTGTAGTCAGCTCCCTCTGTATGGAATACACTCGACAACGGGTGCTGATCCGTTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTTGGAATCACCCCCATCGTGACTTCTGGACTGGTCATGCAACTTTTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCCTAAATGGTGCACAGAAGCTGCTCGGAATCTTGATAGCTGTTGGAGAGGCCGTTGCCTATGTTCTTTCAGGGATGTATGGTAGTGTGGGCCAACTTGGAGTGGGAAATGCCATTCTCATCATCCTCCAGCTCTTTTTTGCCGGTATCATTGTCATATGTTTAGATGAGCTCCTTCAAAAAGGTTATGGTTTGGGATCTGGAATTTCTCTATTCATTGCCACTAATATCTGTGAAAACATTATATGGAAAGCATTTAGTCCCACTACCATTAACAGTGGCCGAGGAGCCGAGTTTGAGGGTGCTGTTATTGCTCTATTCCATTTGTTGATAACTAGAACAGACAAGGTTCGTGCTCTCCGGGAAGCATTTTATCGGCAGAATCTTCCCAATGTCACAAATCTTCTGGCTACTGTCTTGATCTTCTTAATTGTGATATACTTCCAAGGTTTCCGCGTTGTTTTGCCTGTAAGGTCAAAGAATGCCCGTGGACAGCAGGGCTCATATCCAATCAAACTGTTTTACACCTCCAACATGCCCATTATCCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCCTTTCCCAGCTGCTACACAGAAAGTACGCTGGAAACTTCATTGTGGATCTTTTGGGAAAATGGAAGGAATCTGAATATGGAGGCGGTCACTCTATTCCTGTTGGTGGCATTGCATACTATATAACTGCACCGTCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCACTGTTCTACCTGGTGTTTATGCTGTCGGCTTGTGCCTTGTTCTCCAAAACTTGGATTGAGGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGTTGAAGGAACAACAAATGGTTATGCCCGGCCATCGGGAATCAAACTTGCAGAAAGAGCTTAACCGATACATTCCCACTGCTGCAGCATTTGGAGGAATGTGTATTGGTGCGCTGACAGTATTGGCAGATTTTATGGGAGCAATTGGTTCAGGAACCGGAATCTTACTTGCCGTAACAATCATCTATCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGTGAGCTTGGTTTCTTTGGCTTCTAA 1431 0.4486 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFLSQLLHRKYAGNFIVDLLGKWKESEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00249 476 FunFam Transport Sec61 subunit alpha isoform 2 9 474 - -
Vifa4g00249 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 18 470 IPR002208 GO:0015031|GO:0016020
Vifa4g00249 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Vifa4g00249 476 NCBIfam preprotein translocase subunit SecY 31 467 IPR002208 GO:0015031|GO:0016020
Vifa4g00249 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Vifa4g00249 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Vifa4g00249 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Vifa4g00249 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Vifa4g00249 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00249 Vifa-Chr4 49770149 49772263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00249 1 476 Miscellaneous Gene Families AT2G34250 93.067 0.0 907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00249 4 49770149 49772263 Vifa4g00249 4 49770149 49772263 ECH