Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05232 ATGGGATTAGGATTCTTTAAGGCCTTATTTTGTTGCACCACTAAGTCCCAAGACATTCCCATTGTGTCTTCTGATTCAGAGTGCTCTCCTCAACATAGCTCTGGCTATGGCTACAACCAACCATTGCTACCAATTAGTCCTAAAAAATCTACATCATCTTCTAGTAATCCACAAATAGGACATATTCTAGGGAAACCGTATGTCATGATAAATCAGATATACGAGATGAAGAAAGAACTTGGACGAGGTCAATCAGGTGTAACTTATCTATGTACAGAGAGGAGAACCGGGAGAGAATACGCGTGCAAATCAATATCACGAGCGAAACTATTGAGCGAACGAGAGATAGATGATGTGAAAAGAGAGGTTATGATTCTGCAACATCTTTCGGGGCAACCGAATATAGTTGAGTTCAGAGGAGCTTATGAGGATAAACAGAATGTTTATTTAGTGATGGAGGTTTGCAAAGGTGGTGAACTTTTTGATCGGATTATTGCGAAAGGGAACTATACGGAACGTGAAGCTGCCGAAATAATGAGACAGATTGTGAATGTTGTTCATGTGTGTCATTTTATGGGTGTTATGCATCGTGATCTTAAGCCTGAGAATTTCTTGCTTGCTTCACAAGATGAGAAAGCTGCCGTAAAAGCTACTGATTTTGGACTATCCATTTTCCTCGAAGAAGGTAAAGTATATAGAGAGCTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAAAAGGAATTATGGAAAGGAGATTGATGTGTGGAGTGCAGGAATCATTTTATACATCCTCCTATGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAGGGCATATTTCAAGCTATTTTGGAAGGTAAGCTTGATCTGGAAAGTGCACCATGGCCTTCTATTTCAGCTTCTGCAAAAGATTTGATCAGGAAAATGCTGAGTTATGACCCTAAGAAACGCATTACAGCTTCTGATGCCCTTGAACACCCATGGATGAAAGAAGGTGGTGAGGCATCAGACAGGCCCTTAGATAATGCCGTTTTAATCAGGATGAAACAGTTCCGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTGCAGAAGAAGAAATCAAGGGCTTGAAACAAATGTTCAACAATATAGATACGGATCGAAGTGGCACAATCACATATGAAGAACTAAAATCTGGACTGTCCAAATTGGGATCCAAGCTTAGTGAATATGAAATGAAGCAACTAATGGAGGCTGCTGATGTTGACCAGAATGGAACTATTGACTATCATGAATTCATTACTGCCACTATAAACCGGCATAAACTTGAGAGGGAAGAGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATGTAACAAGAGAGGAACTTAGACAAGCTCTGGCTGAACATCAAATGGGAGATGAAGCGACCATAGATGAAGTCATAGATGATGTAGACACTGACAATGATGGACGAATTAATTATCAAGAGTTTGTAGCTATGATGAAAAAGGGCACCTTGGATCATGATGAGAGAGAGAAACCATGA 1575 0.4013 MGLGFFKALFCCTTKSQDIPIVSSDSECSPQHSSGYGYNQPLLPISPKKSTSSSSNPQIGHILGKPYVMINQIYEMKKELGRGQSGVTYLCTERRTGREYACKSISRAKLLSEREIDDVKREVMILQHLSGQPNIVEFRGAYEDKQNVYLVMEVCKGGELFDRIIAKGNYTEREAAEIMRQIVNVVHVCHFMGVMHRDLKPENFLLASQDEKAAVKATDFGLSIFLEEGKVYRELVGSAYYVAPEVLKRNYGKEIDVWSAGIILYILLCGVPPFWAETEKGIFQAILEGKLDLESAPWPSISASAKDLIRKMLSYDPKKRITASDALEHPWMKEGGEASDRPLDNAVLIRMKQFRAMNKMKKLALKVIAENLAEEEIKGLKQMFNNIDTDRSGTITYEELKSGLSKLGSKLSEYEMKQLMEAADVDQNGTIDYHEFITATINRHKLEREENLFKAFQYFDKDNSGYVTREELRQALAEHQMGDEATIDEVIDDVDTDNDGRINYQEFVAMMKKGTLDHDEREKP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05232 524 Pfam EF-hand domain pair 380 440 IPR002048 GO:0005509
Vifa3g05232 524 Pfam EF-hand domain pair 449 512 IPR002048 GO:0005509
Vifa3g05232 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 69 507 - -
Vifa3g05232 524 SUPERFAMILY Protein kinase-like (PK-like) 74 342 IPR011009 -
Vifa3g05232 524 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Vifa3g05232 524 ProSiteProfiles EF-hand calcium-binding domain profile. 483 517 IPR002048 GO:0005509
Vifa3g05232 524 FunFam calcium-dependent protein kinase 1 160 339 - -
Vifa3g05232 524 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Vifa3g05232 524 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Vifa3g05232 524 Gene3D - 340 520 - -
Vifa3g05232 524 SMART efh_1 451 479 IPR002048 GO:0005509
Vifa3g05232 524 SMART efh_1 486 514 IPR002048 GO:0005509
Vifa3g05232 524 SMART efh_1 379 407 IPR002048 GO:0005509
Vifa3g05232 524 SMART efh_1 415 443 IPR002048 GO:0005509
Vifa3g05232 524 CDD STKc_CAMK 74 331 - -
Vifa3g05232 524 FunFam Calcium-dependent protein kinase 1 340 515 - -
Vifa3g05232 524 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Vifa3g05232 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vifa3g05232 524 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Vifa3g05232 524 SMART serkin_6 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05232 524 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Vifa3g05232 524 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Vifa3g05232 524 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05232 524 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vifa3g05232 524 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Vifa3g05232 524 Gene3D Transferase(Phosphotransferase) domain 1 160 339 - -
Vifa3g05232 524 ProSiteProfiles Protein kinase domain profile. 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05232 524 FunFam Calcium-dependent protein kinase 1 76 159 - -
Vifa3g05232 524 SUPERFAMILY EF-hand 372 512 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05232 Vifa-Chr3 1527550227 1527555205 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g05232 Pkinase 6.5e-77 CL0016