Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05203 ATGAGGAAGAGGACTATCCCTTCCGCGCTTCTTCTTCTCTGTATTCTCTTTCTCTTTGTTGCAGATCAAGGTCAAAAGTTTCAGGCGAATGCGGAGGATAATTCCGATGAGCTTGTAGATCCACCTAAGGTGGAAGACAAGATCGGTGCTGTTCCGCAAGGACTTTCAACCGATTCAGATGTGGCAAAGAGAGAAGCGGAGTCAATCTCGAAGAGATCGCTACGAAGCAACGCGGAGAAGTTTGAGTTTCAAGCGGAAGTTTCACGGCTTATGGATATTCTCATCAATTCGCTTTACAGTAACAAAGATATCTTCCTTAGGGAGCTTATTTCAAATGCTTCTGATGCATTGGACAAGATTAGGTTCCTTTCTCTGACTGATAAGGAGGTTTTGGGTGAAGGTGACAACGCCAAGCTTGAAATCCAGATTAAGTTAGATAAGGAGAAGAAAATTCTATCTATTAGAGACAGAGGTATTGGTATGACAAAGGAGGATTTGATAAAGAATTTGGGGACCATAGCTAAATCTGGAACTTCTGCGTTTGTTGAAAAATTGCAGACAAGTGGTGATCTCAATCTAATTGGGCAATTTGGAGTTGGTTTCTACTCTGTGTATCTTGTTGCTGACTATGTTGAAGTTATTAGCAAGCATAATGATGACAAACAGTATGTATGGGAATCCAAAGCTGATGGAGCATTTGCAATTTCAGAAGATACATGGAATGAACCTCTAGGACGTGGAACAGAGATTAGACTGCACCTCAAAGAAGAGGCTGGGGAGTACGCAGAAGAGTTTAAGCTCAAAGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCAATATTTGGGCAAGCAAAGAGGTTGACGTGGAGGTTCCCGCTGATGAAGATCAAGATGAGGACTCAACTGATAGCTCTTCCAAGGAAGAAAATGAAGATGAAGATGCTGATAAAGGCGAAGACGAAGAGGAAAAGCCTAAAACAAAGACAGTGAAGGAAACAACTTACGAGTGGGAACTTTTAAATGATGTCAAAGCTATATGGCTGAGGAGTCCAAAGGAGGTTACAGAGGAAGAGTACACCAAATTCTACAACTCTCTTGCCAAGGATTTTAGCGGTGACAAACCTTTATCATGGAGCCACTTTACTGCTGAAGGTGATGTCGAGTTCAAGGCAGTCCTTTATGTGCCACCTAAAGCACCTCAGGACTTATACGAGAGTTATTACAATTCAAACAAATCAAACTTGAAGTTGTATGTTAGACGAGTGTTCATTTCAGATGAATTTGATGAATTGTTGCCCAAGTATCTGAGCTTTTTGATTGGTCTTGTTGATTCTGACACTTTGCCACTGAATGTATCACGAGAAATGCTTCAACAACACAGTAGTCTGAAGACAATAAAAAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGTAAGCTTGCTGAAGAGGATCCTGACGAGTCCACTGACAAAGAAAAGAAAGAAGAGTCGTCTTCTGATGTTGATGAGAAGAGAGGTCAATACACTAAGTTCTGGAATGAATTTGGAAAATCCATTAAACTTGGTATCATTGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGACCACCAAGTCCGAGGGTAAATTGACATCTCTTGACCAGTACATAACTAGAATGAAAGCTGGACAAAAGGACTTCTTTTACATAACTGGAACCAGCAAAGAACAGCTTGAAAATTCTCCATTCCTTGAGCGGCTTAAGAAGAAGAATTATGAGGTTATTTTCTTCACAGATCCAGTTGATGAATACTTGATGCAATATCTAATGGACTATGAAGATAAGAAGTTCCAAAATGTGTCCAAGGAGGGTCTGAAACTTGGAAAGGATTCAAATGACAAGGAACTAAAGGAATCCTTCAAGGATCTAACAAAATGGTGGAAAAACTCCCTTTCAAACGACAATGTTGATGATGTGAAGATATCCAACCGATTGGATAACACTCCTTGTGTGGTTGTGACATCAAAGTTTGGTTGGAGTGCAAACATGGAGAGAATTATGCAGTCTCAAACTTTGTCAGATGCCAAAAGGCAAGCTTACATGCGTGGCAAGAGGGTTCTTGAGATCAATCCTAGACACCCCATCATCAAGGAACTCCGGGAGAGAGTAGTTAAGAACCCTGAGGATGAGAGTGTGAAGCAAACAGCGCAGCTGATATACCAGACTGCACTCTACGAAAGTGGTTTCTTGTTGAATGATCCCAAGGAATTTGCTTCCAGAATTTATGATTCAGTGAAGACTAGCTTAGACATCAGTCCTGATGCAACTGTTGAAGAGGAAGATGAGACCGAAGTTGAGGTTGAAAGTGAAACAAAAGAAGAGACTACTTCAACTCCTGAAGCTAATGAAGTAAATGATGATGCAGATGTCAAGGACGAATTGTAG 2451 0.4068 MRKRTIPSALLLLCILFLFVADQGQKFQANAEDNSDELVDPPKVEDKIGAVPQGLSTDSDVAKREAESISKRSLRSNAEKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKLQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLKEEAGEYAEEFKLKELVKRYSEFINFPINIWASKEVDVEVPADEDQDEDSTDSSSKEENEDEDADKGEDEEEKPKTKTVKETTYEWELLNDVKAIWLRSPKEVTEEEYTKFYNSLAKDFSGDKPLSWSHFTAEGDVEFKAVLYVPPKAPQDLYESYYNSNKSNLKLYVRRVFISDEFDELLPKYLSFLIGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKLAEEDPDESTDKEKKEESSSDVDEKRGQYTKFWNEFGKSIKLGIIEDATNRNRLAKLLRFETTKSEGKLTSLDQYITRMKAGQKDFFYITGTSKEQLENSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSNDKELKESFKDLTKWWKNSLSNDNVDDVKISNRLDNTPCVVVTSKFGWSANMERIMQSQTLSDAKRQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLIYQTALYESGFLLNDPKEFASRIYDSVKTSLDISPDATVEEEDETEVEVESETKEETTSTPEANEVNDDADVKDEL 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 246 263 IPR020575 -
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 264 282 IPR020575 -
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 151 168 IPR020575 -
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 169 186 IPR020575 -
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 100 122 IPR020575 -
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 79 99 IPR020575 -
Vifa3g05203 816 PRINTS 90kDa heat shock protein signature 194 216 IPR020575 -
Vifa3g05203 816 Gene3D - 633 778 IPR037196 -
Vifa3g05203 816 SUPERFAMILY HSP90 C-terminal domain 644 766 IPR037196 -
Vifa3g05203 816 MobiDBLite consensus disorder prediction 295 322 - -
Vifa3g05203 816 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 72 792 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa3g05203 816 Hamap Chaperone protein HtpG [htpG]. 76 768 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa3g05203 816 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 79 288 IPR036890 -
Vifa3g05203 816 SMART HKATPase_4 101 258 IPR003594 -
Vifa3g05203 816 Gene3D - 538 625 - -
Vifa3g05203 816 PIRSF HSP90_HTPG 52 811 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa3g05203 816 CDD HATPase_Hsp90-like 88 278 IPR020575 -
Vifa3g05203 816 SUPERFAMILY Ribosomal protein S5 domain 2-like 346 625 IPR020568 -
Vifa3g05203 816 MobiDBLite consensus disorder prediction 485 506 - -
Vifa3g05203 816 FunFam endoplasmin homolog 538 625 - -
Vifa3g05203 816 ProSitePatterns Heat shock hsp90 proteins family signature. 99 108 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vifa3g05203 816 FunFam endoplasmin homolog 345 537 - -
Vifa3g05203 816 Gene3D - 345 537 - -
Vifa3g05203 816 FunFam Endoplasmin-like isoform B 632 778 - -
Vifa3g05203 816 MobiDBLite consensus disorder prediction 776 791 - -
Vifa3g05203 816 Gene3D - 66 300 IPR036890 -
Vifa3g05203 816 FunFam Heat shock protein 90 69 304 - -
Vifa3g05203 816 Pfam Hsp90 protein 260 797 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa3g05203 816 MobiDBLite consensus disorder prediction 295 333 - -
Vifa3g05203 816 MobiDBLite consensus disorder prediction 774 816 - -
Vifa3g05203 816 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 102 257 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05203 Vifa-Chr3 1520332363 1520336903 Dispersed/Transposed